Hb_001950_050

Information

Type -
Description -
Location Contig1950: 24783-26236
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_050 0.0 - - -
2 Hb_000552_040 0.0067042426 - - -
3 Hb_033273_010 0.0136900227 - - -
4 Hb_000045_100 0.0207989066 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002281_030 0.0209165027 - - -
6 Hb_002792_040 0.0253182349 - - -
7 Hb_000421_150 0.0337724975 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_007101_240 0.0349503122 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010681_020 0.0359620485 - - JHL22C18.10 [Jatropha curcas]
10 Hb_000483_290 0.036193537 - - PREDICTED: ankyrin-1-like [Prunus mume]
11 Hb_007455_010 0.0402925046 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
12 Hb_051677_010 0.0439401123 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
13 Hb_002391_060 0.0447362967 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
14 Hb_000345_520 0.0486345574 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
15 Hb_023280_020 0.049992219 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
16 Hb_000819_050 0.0530084725 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
17 Hb_025161_040 0.0561695599 - - kinase, putative [Ricinus communis]
18 Hb_000029_240 0.0627657051 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
19 Hb_142461_010 0.0664873709 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_065272_010 0.0678936792 - - hypothetical protein JCGZ_06349 [Jatropha curcas]

Gene co-expression network

sample Hb_001950_050 Hb_001950_050 Hb_000552_040 Hb_000552_040 Hb_001950_050--Hb_000552_040 Hb_033273_010 Hb_033273_010 Hb_001950_050--Hb_033273_010 Hb_000045_100 Hb_000045_100 Hb_001950_050--Hb_000045_100 Hb_002281_030 Hb_002281_030 Hb_001950_050--Hb_002281_030 Hb_002792_040 Hb_002792_040 Hb_001950_050--Hb_002792_040 Hb_000421_150 Hb_000421_150 Hb_001950_050--Hb_000421_150 Hb_000552_040--Hb_002281_030 Hb_000552_040--Hb_002792_040 Hb_000552_040--Hb_033273_010 Hb_000552_040--Hb_000045_100 Hb_007455_010 Hb_007455_010 Hb_000552_040--Hb_007455_010 Hb_033273_010--Hb_000045_100 Hb_033273_010--Hb_000421_150 Hb_007101_240 Hb_007101_240 Hb_033273_010--Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_033273_010--Hb_010681_020 Hb_000045_100--Hb_000421_150 Hb_000045_100--Hb_007101_240 Hb_000045_100--Hb_010681_020 Hb_000483_290 Hb_000483_290 Hb_000045_100--Hb_000483_290 Hb_002281_030--Hb_002792_040 Hb_002281_030--Hb_007455_010 Hb_051677_010 Hb_051677_010 Hb_002281_030--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_002281_030--Hb_002391_060 Hb_002792_040--Hb_007455_010 Hb_002792_040--Hb_051677_010 Hb_002792_040--Hb_002391_060 Hb_000421_150--Hb_007101_240 Hb_000421_150--Hb_010681_020 Hb_000421_150--Hb_000483_290 Hb_000345_520 Hb_000345_520 Hb_000421_150--Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000421_150--Hb_023280_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.381927 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0749978 0

CAGE analysis