Hb_002792_040

Information

Type -
Description -
Location Contig2792: 67150-86064
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002792_040 0.0 - - -
2 Hb_002281_030 0.0044040776 - - -
3 Hb_007455_010 0.0149902778 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
4 Hb_000552_040 0.0186170792 - - -
5 Hb_051677_010 0.0186437559 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
6 Hb_002391_060 0.0194413284 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
7 Hb_001950_050 0.0253182349 - - -
8 Hb_025161_040 0.0308988857 - - kinase, putative [Ricinus communis]
9 Hb_000029_240 0.0375129013 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
10 Hb_033273_010 0.0389955857 - - -
11 Hb_065272_010 0.0426568109 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
12 Hb_000045_100 0.0460947042 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002092_050 0.0469056424 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
14 Hb_000331_600 0.0496013504 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
15 Hb_012090_010 0.0524183423 - - hypothetical protein RCOM_0904330 [Ricinus communis]
16 Hb_000313_240 0.0529467825 - - hypothetical protein RCOM_0377590 [Ricinus communis]
17 Hb_000421_150 0.0590452424 - - Zinc finger protein GIS2 [Medicago truncatula]
18 Hb_007101_240 0.0602206442 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010681_020 0.0612302666 - - JHL22C18.10 [Jatropha curcas]
20 Hb_000483_290 0.0614612661 - - PREDICTED: ankyrin-1-like [Prunus mume]

Gene co-expression network

sample Hb_002792_040 Hb_002792_040 Hb_002281_030 Hb_002281_030 Hb_002792_040--Hb_002281_030 Hb_007455_010 Hb_007455_010 Hb_002792_040--Hb_007455_010 Hb_000552_040 Hb_000552_040 Hb_002792_040--Hb_000552_040 Hb_051677_010 Hb_051677_010 Hb_002792_040--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_002792_040--Hb_002391_060 Hb_001950_050 Hb_001950_050 Hb_002792_040--Hb_001950_050 Hb_002281_030--Hb_000552_040 Hb_002281_030--Hb_007455_010 Hb_002281_030--Hb_001950_050 Hb_002281_030--Hb_051677_010 Hb_002281_030--Hb_002391_060 Hb_007455_010--Hb_051677_010 Hb_007455_010--Hb_002391_060 Hb_025161_040 Hb_025161_040 Hb_007455_010--Hb_025161_040 Hb_000029_240 Hb_000029_240 Hb_007455_010--Hb_000029_240 Hb_000552_040--Hb_001950_050 Hb_033273_010 Hb_033273_010 Hb_000552_040--Hb_033273_010 Hb_000045_100 Hb_000045_100 Hb_000552_040--Hb_000045_100 Hb_000552_040--Hb_007455_010 Hb_051677_010--Hb_002391_060 Hb_051677_010--Hb_025161_040 Hb_051677_010--Hb_000029_240 Hb_002391_060--Hb_025161_040 Hb_002391_060--Hb_000029_240 Hb_065272_010 Hb_065272_010 Hb_002391_060--Hb_065272_010 Hb_001950_050--Hb_033273_010 Hb_001950_050--Hb_000045_100 Hb_000421_150 Hb_000421_150 Hb_001950_050--Hb_000421_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.31413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.218666 0

CAGE analysis