Hb_002391_060

Information

Type -
Description -
Location Contig2391: 40695-58807
Sequence    

Annotation

kegg
ID vvi:100853799
description uncharacterized LOC100853799
nr
ID XP_003635528.2
description PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BBA5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032885 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25050: 58233-58682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_060 0.0 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
2 Hb_051677_010 0.0007979086 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
3 Hb_007455_010 0.0044525465 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
4 Hb_025161_040 0.0114657827 - - kinase, putative [Ricinus communis]
5 Hb_000029_240 0.0180875608 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
6 Hb_002792_040 0.0194413284 - - -
7 Hb_065272_010 0.0232391119 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
8 Hb_002281_030 0.0238431499 - - -
9 Hb_002092_050 0.0274953515 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
10 Hb_000331_600 0.0301962876 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
11 Hb_012090_010 0.0330191901 - - hypothetical protein RCOM_0904330 [Ricinus communis]
12 Hb_000313_240 0.0335487907 - - hypothetical protein RCOM_0377590 [Ricinus communis]
13 Hb_000552_040 0.0380436491 - - -
14 Hb_001950_050 0.0447362967 - - -
15 Hb_001304_150 0.0455282314 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_154146_010 0.0483655887 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
17 Hb_033273_010 0.0583914734 - - -
18 Hb_000045_100 0.065476691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001278_010 0.0687511782 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000355_020 0.071105774 - - -

Gene co-expression network

sample Hb_002391_060 Hb_002391_060 Hb_051677_010 Hb_051677_010 Hb_002391_060--Hb_051677_010 Hb_007455_010 Hb_007455_010 Hb_002391_060--Hb_007455_010 Hb_025161_040 Hb_025161_040 Hb_002391_060--Hb_025161_040 Hb_000029_240 Hb_000029_240 Hb_002391_060--Hb_000029_240 Hb_002792_040 Hb_002792_040 Hb_002391_060--Hb_002792_040 Hb_065272_010 Hb_065272_010 Hb_002391_060--Hb_065272_010 Hb_051677_010--Hb_007455_010 Hb_051677_010--Hb_025161_040 Hb_051677_010--Hb_002792_040 Hb_051677_010--Hb_000029_240 Hb_002281_030 Hb_002281_030 Hb_051677_010--Hb_002281_030 Hb_007455_010--Hb_002792_040 Hb_007455_010--Hb_025161_040 Hb_007455_010--Hb_002281_030 Hb_007455_010--Hb_000029_240 Hb_025161_040--Hb_000029_240 Hb_025161_040--Hb_065272_010 Hb_002092_050 Hb_002092_050 Hb_025161_040--Hb_002092_050 Hb_000029_240--Hb_065272_010 Hb_000029_240--Hb_002092_050 Hb_000331_600 Hb_000331_600 Hb_000029_240--Hb_000331_600 Hb_012090_010 Hb_012090_010 Hb_000029_240--Hb_012090_010 Hb_000313_240 Hb_000313_240 Hb_000029_240--Hb_000313_240 Hb_002792_040--Hb_002281_030 Hb_000552_040 Hb_000552_040 Hb_002792_040--Hb_000552_040 Hb_001950_050 Hb_001950_050 Hb_002792_040--Hb_001950_050 Hb_065272_010--Hb_002092_050 Hb_065272_010--Hb_000331_600 Hb_065272_010--Hb_012090_010 Hb_065272_010--Hb_000313_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0250908 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00365093 0

CAGE analysis