Hb_000552_040

Information

Type -
Description -
Location Contig552: 27752-28106
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008168
description probable caffeine synthase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000552_040 0.0 - - -
2 Hb_001950_050 0.0067042426 - - -
3 Hb_002281_030 0.01421419 - - -
4 Hb_002792_040 0.0186170792 - - -
5 Hb_033273_010 0.0203925733 - - -
6 Hb_000045_100 0.0274997304 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007455_010 0.0335974012 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
8 Hb_051677_010 0.0372470017 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
9 Hb_002391_060 0.0380436491 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
10 Hb_000421_150 0.0404687729 - - Zinc finger protein GIS2 [Medicago truncatula]
11 Hb_007101_240 0.041646089 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010681_020 0.042657386 - - JHL22C18.10 [Jatropha curcas]
13 Hb_000483_290 0.0428887725 - - PREDICTED: ankyrin-1-like [Prunus mume]
14 Hb_025161_040 0.049484705 - - kinase, putative [Ricinus communis]
15 Hb_000345_520 0.0553235536 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
16 Hb_000029_240 0.0560863554 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
17 Hb_023280_020 0.0566804464 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
18 Hb_000819_050 0.0596949321 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
19 Hb_065272_010 0.0612191431 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
20 Hb_002092_050 0.0654577629 - - hypothetical protein JCGZ_05877 [Jatropha curcas]

Gene co-expression network

sample Hb_000552_040 Hb_000552_040 Hb_001950_050 Hb_001950_050 Hb_000552_040--Hb_001950_050 Hb_002281_030 Hb_002281_030 Hb_000552_040--Hb_002281_030 Hb_002792_040 Hb_002792_040 Hb_000552_040--Hb_002792_040 Hb_033273_010 Hb_033273_010 Hb_000552_040--Hb_033273_010 Hb_000045_100 Hb_000045_100 Hb_000552_040--Hb_000045_100 Hb_007455_010 Hb_007455_010 Hb_000552_040--Hb_007455_010 Hb_001950_050--Hb_033273_010 Hb_001950_050--Hb_000045_100 Hb_001950_050--Hb_002281_030 Hb_001950_050--Hb_002792_040 Hb_000421_150 Hb_000421_150 Hb_001950_050--Hb_000421_150 Hb_002281_030--Hb_002792_040 Hb_002281_030--Hb_007455_010 Hb_051677_010 Hb_051677_010 Hb_002281_030--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_002281_030--Hb_002391_060 Hb_002792_040--Hb_007455_010 Hb_002792_040--Hb_051677_010 Hb_002792_040--Hb_002391_060 Hb_033273_010--Hb_000045_100 Hb_033273_010--Hb_000421_150 Hb_007101_240 Hb_007101_240 Hb_033273_010--Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_033273_010--Hb_010681_020 Hb_000045_100--Hb_000421_150 Hb_000045_100--Hb_007101_240 Hb_000045_100--Hb_010681_020 Hb_000483_290 Hb_000483_290 Hb_000045_100--Hb_000483_290 Hb_007455_010--Hb_051677_010 Hb_007455_010--Hb_002391_060 Hb_025161_040 Hb_025161_040 Hb_007455_010--Hb_025161_040 Hb_000029_240 Hb_000029_240 Hb_007455_010--Hb_000029_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.73323 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.326046 0

CAGE analysis