Hb_000421_150

Information

Type -
Description -
Location Contig421: 112658-113086
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID O74555
description Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bpb1 PE=1 SV=1
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_150 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_007101_240 0.0011789342 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010681_020 0.0021916885 - - JHL22C18.10 [Jatropha curcas]
4 Hb_000483_290 0.0024234171 - - PREDICTED: ankyrin-1-like [Prunus mume]
5 Hb_000045_100 0.0129811205 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_520 0.0148812392 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
7 Hb_023280_020 0.0162411851 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_000819_050 0.0192628211 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
9 Hb_033273_010 0.0200902472 - - -
10 Hb_142461_010 0.0327707908 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_001950_050 0.0337724975 - - -
12 Hb_000552_040 0.0404687729 - - -
13 Hb_175976_020 0.0405372611 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_001424_050 0.0464894287 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_005656_020 0.047967997 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
16 Hb_002281_030 0.0546545068 - - -
17 Hb_002792_040 0.0590452424 - - -
18 Hb_034507_020 0.0633833929 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_017226_020 0.0645160003 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
20 Hb_007455_010 0.0739716364 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]

Gene co-expression network

sample Hb_000421_150 Hb_000421_150 Hb_007101_240 Hb_007101_240 Hb_000421_150--Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_000421_150--Hb_010681_020 Hb_000483_290 Hb_000483_290 Hb_000421_150--Hb_000483_290 Hb_000045_100 Hb_000045_100 Hb_000421_150--Hb_000045_100 Hb_000345_520 Hb_000345_520 Hb_000421_150--Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000421_150--Hb_023280_020 Hb_007101_240--Hb_010681_020 Hb_007101_240--Hb_000483_290 Hb_007101_240--Hb_000345_520 Hb_007101_240--Hb_000045_100 Hb_007101_240--Hb_023280_020 Hb_010681_020--Hb_000483_290 Hb_010681_020--Hb_000345_520 Hb_010681_020--Hb_023280_020 Hb_010681_020--Hb_000045_100 Hb_000483_290--Hb_000345_520 Hb_000483_290--Hb_023280_020 Hb_000483_290--Hb_000045_100 Hb_033273_010 Hb_033273_010 Hb_000045_100--Hb_033273_010 Hb_001950_050 Hb_001950_050 Hb_000045_100--Hb_001950_050 Hb_000345_520--Hb_023280_020 Hb_000819_050 Hb_000819_050 Hb_000345_520--Hb_000819_050 Hb_023280_020--Hb_000819_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.240578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0581407 0

CAGE analysis