Hb_000345_520

Information

Type -
Description -
Location Contig345: 413354-413632
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02440g
description hypothetical protein
nr
ID XP_006375765.1
description hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWA4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_520 0.0 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
2 Hb_023280_020 0.0013601823 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
3 Hb_000819_050 0.0043824805 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
4 Hb_000483_290 0.0124581529 - - PREDICTED: ankyrin-1-like [Prunus mume]
5 Hb_010681_020 0.0126898556 - - JHL22C18.10 [Jatropha curcas]
6 Hb_007101_240 0.0137024824 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000421_150 0.0148812392 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_142461_010 0.0178956531 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_175976_020 0.025666707 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
10 Hb_000045_100 0.0278582896 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001424_050 0.0316231386 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
12 Hb_005656_020 0.0331028646 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
13 Hb_033273_010 0.0349634812 - - -
14 Hb_034507_020 0.0485325766 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_001950_050 0.0486345574 - - -
16 Hb_017226_020 0.0496663927 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
17 Hb_000552_040 0.0553235536 - - -
18 Hb_002281_030 0.0694896974 - - -
19 Hb_002792_040 0.0738731709 - - -
20 Hb_000996_090 0.0794870222 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000345_520 Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000345_520--Hb_023280_020 Hb_000819_050 Hb_000819_050 Hb_000345_520--Hb_000819_050 Hb_000483_290 Hb_000483_290 Hb_000345_520--Hb_000483_290 Hb_010681_020 Hb_010681_020 Hb_000345_520--Hb_010681_020 Hb_007101_240 Hb_007101_240 Hb_000345_520--Hb_007101_240 Hb_000421_150 Hb_000421_150 Hb_000345_520--Hb_000421_150 Hb_023280_020--Hb_000819_050 Hb_023280_020--Hb_000483_290 Hb_023280_020--Hb_010681_020 Hb_023280_020--Hb_007101_240 Hb_023280_020--Hb_000421_150 Hb_142461_010 Hb_142461_010 Hb_000819_050--Hb_142461_010 Hb_000819_050--Hb_000483_290 Hb_000819_050--Hb_010681_020 Hb_000819_050--Hb_007101_240 Hb_000483_290--Hb_010681_020 Hb_000483_290--Hb_007101_240 Hb_000483_290--Hb_000421_150 Hb_000045_100 Hb_000045_100 Hb_000483_290--Hb_000045_100 Hb_010681_020--Hb_007101_240 Hb_010681_020--Hb_000421_150 Hb_010681_020--Hb_000045_100 Hb_007101_240--Hb_000421_150 Hb_007101_240--Hb_000045_100 Hb_000421_150--Hb_000045_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.79476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.0008 0

CAGE analysis