Hb_142461_010

Information

Type -
Description -
Location Contig142461: 1379-2105
Sequence    

Annotation

kegg
ID rcu:RCOM_0338890
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002531991.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q2QXJ4
description Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1
trembl
ID B9T180
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_0338890 PE=4 SV=1
Gene Ontology
ID GO:0030145
description rhicadhesin receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142461_010 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_175976_020 0.00777339 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
3 Hb_000819_050 0.0135138904 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
4 Hb_001424_050 0.0137325219 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
5 Hb_005656_020 0.0152130382 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
6 Hb_023280_020 0.0165357448 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
7 Hb_000345_520 0.0178956531 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
8 Hb_000483_290 0.0303490945 - - PREDICTED: ankyrin-1-like [Prunus mume]
9 Hb_010681_020 0.0305806711 - - JHL22C18.10 [Jatropha curcas]
10 Hb_034507_020 0.0306537221 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_007101_240 0.0315927299 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017226_020 0.0317885355 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
13 Hb_000421_150 0.0327707908 - - Zinc finger protein GIS2 [Medicago truncatula]
14 Hb_000045_100 0.0457376495 - - conserved hypothetical protein [Ricinus communis]
15 Hb_033273_010 0.0528352262 - - -
16 Hb_000996_090 0.0616441222 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
17 Hb_001950_050 0.0664873709 - - -
18 Hb_099777_010 0.0726071701 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
19 Hb_000552_040 0.0731649581 - - -
20 Hb_004634_010 0.0789497641 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]

Gene co-expression network

sample Hb_142461_010 Hb_142461_010 Hb_175976_020 Hb_175976_020 Hb_142461_010--Hb_175976_020 Hb_000819_050 Hb_000819_050 Hb_142461_010--Hb_000819_050 Hb_001424_050 Hb_001424_050 Hb_142461_010--Hb_001424_050 Hb_005656_020 Hb_005656_020 Hb_142461_010--Hb_005656_020 Hb_023280_020 Hb_023280_020 Hb_142461_010--Hb_023280_020 Hb_000345_520 Hb_000345_520 Hb_142461_010--Hb_000345_520 Hb_175976_020--Hb_001424_050 Hb_175976_020--Hb_005656_020 Hb_175976_020--Hb_000819_050 Hb_034507_020 Hb_034507_020 Hb_175976_020--Hb_034507_020 Hb_017226_020 Hb_017226_020 Hb_175976_020--Hb_017226_020 Hb_000819_050--Hb_023280_020 Hb_000819_050--Hb_000345_520 Hb_000483_290 Hb_000483_290 Hb_000819_050--Hb_000483_290 Hb_010681_020 Hb_010681_020 Hb_000819_050--Hb_010681_020 Hb_007101_240 Hb_007101_240 Hb_000819_050--Hb_007101_240 Hb_001424_050--Hb_005656_020 Hb_001424_050--Hb_034507_020 Hb_001424_050--Hb_017226_020 Hb_001424_050--Hb_000819_050 Hb_005656_020--Hb_034507_020 Hb_005656_020--Hb_017226_020 Hb_005656_020--Hb_000819_050 Hb_023280_020--Hb_000345_520 Hb_023280_020--Hb_000483_290 Hb_023280_020--Hb_010681_020 Hb_023280_020--Hb_007101_240 Hb_000421_150 Hb_000421_150 Hb_023280_020--Hb_000421_150 Hb_000345_520--Hb_000483_290 Hb_000345_520--Hb_010681_020 Hb_000345_520--Hb_007101_240 Hb_000345_520--Hb_000421_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.337562 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0986057 0

CAGE analysis