Hb_017226_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig17226: 7135-9672
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17300g
description POPTRDRAFT_567011; hypothetical protein
nr
ID KDP37818.1
description hypothetical protein JCGZ_06720 [Jatropha curcas]
swissprot
ID O64399
description Transcription factor MYB34 OS=Arabidopsis thaliana GN=MYB34 PE=1 SV=1
trembl
ID A0A067KS62
description MYB family protein OS=Jatropha curcas GN=JCGZ_06720 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb25-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017226_020 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
2 Hb_034507_020 0.001135461 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_005656_020 0.0165802993 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
4 Hb_001424_050 0.0180607458 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
5 Hb_175976_020 0.0240187399 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_000996_090 0.0298883687 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
7 Hb_142461_010 0.0317885355 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_099777_010 0.0408706262 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
9 Hb_000819_050 0.0452902541 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
10 Hb_004634_010 0.0472259786 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
11 Hb_023280_020 0.04830832 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
12 Hb_007017_130 0.0491671328 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
13 Hb_000345_520 0.0496663927 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
14 Hb_001975_170 0.0498448002 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
15 Hb_000967_070 0.060711028 - - rubber peroxidase 1 [Hevea brasiliensis]
16 Hb_000483_290 0.0620991555 - - PREDICTED: ankyrin-1-like [Prunus mume]
17 Hb_010681_020 0.0623302801 - - JHL22C18.10 [Jatropha curcas]
18 Hb_007101_240 0.0633403339 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000421_150 0.0645160003 - - Zinc finger protein GIS2 [Medicago truncatula]
20 Hb_003589_040 0.0678708158 - - hypothetical protein JCGZ_01204 [Jatropha curcas]

Gene co-expression network

sample Hb_017226_020 Hb_017226_020 Hb_034507_020 Hb_034507_020 Hb_017226_020--Hb_034507_020 Hb_005656_020 Hb_005656_020 Hb_017226_020--Hb_005656_020 Hb_001424_050 Hb_001424_050 Hb_017226_020--Hb_001424_050 Hb_175976_020 Hb_175976_020 Hb_017226_020--Hb_175976_020 Hb_000996_090 Hb_000996_090 Hb_017226_020--Hb_000996_090 Hb_142461_010 Hb_142461_010 Hb_017226_020--Hb_142461_010 Hb_034507_020--Hb_005656_020 Hb_034507_020--Hb_001424_050 Hb_034507_020--Hb_175976_020 Hb_034507_020--Hb_142461_010 Hb_034507_020--Hb_000996_090 Hb_005656_020--Hb_001424_050 Hb_005656_020--Hb_175976_020 Hb_005656_020--Hb_142461_010 Hb_000819_050 Hb_000819_050 Hb_005656_020--Hb_000819_050 Hb_001424_050--Hb_175976_020 Hb_001424_050--Hb_142461_010 Hb_001424_050--Hb_000819_050 Hb_175976_020--Hb_142461_010 Hb_175976_020--Hb_000819_050 Hb_099777_010 Hb_099777_010 Hb_000996_090--Hb_099777_010 Hb_004634_010 Hb_004634_010 Hb_000996_090--Hb_004634_010 Hb_007017_130 Hb_007017_130 Hb_000996_090--Hb_007017_130 Hb_001975_170 Hb_001975_170 Hb_000996_090--Hb_001975_170 Hb_000967_070 Hb_000967_070 Hb_000996_090--Hb_000967_070 Hb_142461_010--Hb_000819_050 Hb_023280_020 Hb_023280_020 Hb_142461_010--Hb_023280_020 Hb_000345_520 Hb_000345_520 Hb_142461_010--Hb_000345_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0743875 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0258826 0

CAGE analysis