Hb_001975_170

Information

Type -
Description -
Location Contig1975: 147938-149336
Sequence    

Annotation

kegg
ID sbi:SORBI_05g025140
description SORBIDRAFT_05g025140, Sb05g025140; hypothetical protein
nr
ID XP_010273630.1
description PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
swissprot
ID Q9FJD0
description Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1
trembl
ID A0A0A9ND40
description Vpsh26 OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_170 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
2 Hb_007017_130 0.0006784825 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
3 Hb_004634_010 0.0026218539 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
4 Hb_099777_010 0.0089832361 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
5 Hb_000967_070 0.0108821445 - - rubber peroxidase 1 [Hevea brasiliensis]
6 Hb_003589_040 0.0180552869 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
7 Hb_004375_040 0.0191066139 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
8 Hb_000108_010 0.0191118557 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
9 Hb_000996_090 0.0199713679 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
10 Hb_150263_030 0.0239438224 - - conserved hypothetical protein [Ricinus communis]
11 Hb_060231_020 0.0394754252 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
12 Hb_025519_010 0.0415077704 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
13 Hb_034661_050 0.047946215 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
14 Hb_017226_020 0.0498448002 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
15 Hb_034507_020 0.0509787538 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_017279_020 0.0607230492 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
17 Hb_005656_020 0.0663958386 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
18 Hb_001424_050 0.0678728986 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
19 Hb_004153_040 0.070699123 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_175976_020 0.0738159406 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_170 Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_001975_170--Hb_007017_130 Hb_004634_010 Hb_004634_010 Hb_001975_170--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_001975_170--Hb_099777_010 Hb_000967_070 Hb_000967_070 Hb_001975_170--Hb_000967_070 Hb_003589_040 Hb_003589_040 Hb_001975_170--Hb_003589_040 Hb_004375_040 Hb_004375_040 Hb_001975_170--Hb_004375_040 Hb_007017_130--Hb_004634_010 Hb_007017_130--Hb_099777_010 Hb_007017_130--Hb_000967_070 Hb_007017_130--Hb_003589_040 Hb_000996_090 Hb_000996_090 Hb_007017_130--Hb_000996_090 Hb_004634_010--Hb_099777_010 Hb_004634_010--Hb_000967_070 Hb_004634_010--Hb_000996_090 Hb_004634_010--Hb_003589_040 Hb_099777_010--Hb_000996_090 Hb_099777_010--Hb_000967_070 Hb_099777_010--Hb_003589_040 Hb_000967_070--Hb_003589_040 Hb_000967_070--Hb_004375_040 Hb_000108_010 Hb_000108_010 Hb_000967_070--Hb_000108_010 Hb_150263_030 Hb_150263_030 Hb_000967_070--Hb_150263_030 Hb_003589_040--Hb_004375_040 Hb_003589_040--Hb_000108_010 Hb_003589_040--Hb_150263_030 Hb_004375_040--Hb_000108_010 Hb_004375_040--Hb_150263_030 Hb_004375_040--Hb_007017_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.140372 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0633793 0

CAGE analysis