Hb_000108_010

Information

Type -
Description -
Location Contig108: 1789-2845
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06140g
description POPTRDRAFT_825135; hypothetical protein
nr
ID XP_002323341.2
description hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IIC6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s06140g PE=4 SV=2
Gene Ontology
ID GO:0000166
description probable lrr receptor-like serine threonine-protein kinase at1g53440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_010 0.0 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
2 Hb_004375_040 5.2426e-06 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
3 Hb_003589_040 0.0010567306 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
4 Hb_150263_030 0.0048329422 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000967_070 0.0082304767 - - rubber peroxidase 1 [Hevea brasiliensis]
6 Hb_001975_170 0.0191118557 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
7 Hb_007017_130 0.019790222 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
8 Hb_060231_020 0.0203702414 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
9 Hb_004634_010 0.0217332156 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
10 Hb_025519_010 0.0224036146 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
11 Hb_099777_010 0.0280928884 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
12 Hb_034661_050 0.0288457381 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
13 Hb_000996_090 0.0390763259 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
14 Hb_017279_020 0.041631735 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
15 Hb_004153_040 0.0516166398 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_015852_010 0.0550640628 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_001232_030 0.0671824471 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
18 Hb_017226_020 0.0689252297 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
19 Hb_034507_020 0.0700578965 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_091368_010 0.0777116545 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000108_010 Hb_000108_010 Hb_004375_040 Hb_004375_040 Hb_000108_010--Hb_004375_040 Hb_003589_040 Hb_003589_040 Hb_000108_010--Hb_003589_040 Hb_150263_030 Hb_150263_030 Hb_000108_010--Hb_150263_030 Hb_000967_070 Hb_000967_070 Hb_000108_010--Hb_000967_070 Hb_001975_170 Hb_001975_170 Hb_000108_010--Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_000108_010--Hb_007017_130 Hb_004375_040--Hb_003589_040 Hb_004375_040--Hb_150263_030 Hb_004375_040--Hb_000967_070 Hb_004375_040--Hb_001975_170 Hb_004375_040--Hb_007017_130 Hb_003589_040--Hb_150263_030 Hb_003589_040--Hb_000967_070 Hb_003589_040--Hb_001975_170 Hb_003589_040--Hb_007017_130 Hb_150263_030--Hb_000967_070 Hb_060231_020 Hb_060231_020 Hb_150263_030--Hb_060231_020 Hb_025519_010 Hb_025519_010 Hb_150263_030--Hb_025519_010 Hb_000967_070--Hb_001975_170 Hb_000967_070--Hb_007017_130 Hb_001975_170--Hb_007017_130 Hb_004634_010 Hb_004634_010 Hb_001975_170--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_001975_170--Hb_099777_010 Hb_007017_130--Hb_004634_010 Hb_007017_130--Hb_099777_010 Hb_000996_090 Hb_000996_090 Hb_007017_130--Hb_000996_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.140083 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0696477 0

CAGE analysis