Hb_060231_020

Information

Type -
Description -
Location Contig60231: 6006-7839
Sequence    

Annotation

kegg
ID tcc:TCM_020939
description Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1
nr
ID XP_012069875.1
description PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02362 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060231_020 0.0 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
2 Hb_025519_010 0.0020337604 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
3 Hb_034661_050 0.0084775626 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
4 Hb_150263_030 0.0155379479 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000108_010 0.0203702414 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
6 Hb_004375_040 0.0203754831 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
7 Hb_017279_020 0.0212688893 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
8 Hb_003589_040 0.0214267753 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
9 Hb_000967_070 0.0285986588 - - rubber peroxidase 1 [Hevea brasiliensis]
10 Hb_004153_040 0.0312597591 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_015852_010 0.034709601 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
12 Hb_001975_170 0.0394754252 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
13 Hb_007017_130 0.0401534313 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
14 Hb_004634_010 0.0420953451 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
15 Hb_001232_030 0.0468379236 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
16 Hb_099777_010 0.0484509829 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
17 Hb_091368_010 0.0573775461 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_000996_090 0.0594256084 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
19 Hb_001544_010 0.0655252924 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000166_010 0.0704464293 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_060231_020 Hb_060231_020 Hb_025519_010 Hb_025519_010 Hb_060231_020--Hb_025519_010 Hb_034661_050 Hb_034661_050 Hb_060231_020--Hb_034661_050 Hb_150263_030 Hb_150263_030 Hb_060231_020--Hb_150263_030 Hb_000108_010 Hb_000108_010 Hb_060231_020--Hb_000108_010 Hb_004375_040 Hb_004375_040 Hb_060231_020--Hb_004375_040 Hb_017279_020 Hb_017279_020 Hb_060231_020--Hb_017279_020 Hb_025519_010--Hb_034661_050 Hb_025519_010--Hb_150263_030 Hb_025519_010--Hb_017279_020 Hb_025519_010--Hb_000108_010 Hb_025519_010--Hb_004375_040 Hb_034661_050--Hb_017279_020 Hb_004153_040 Hb_004153_040 Hb_034661_050--Hb_004153_040 Hb_034661_050--Hb_150263_030 Hb_015852_010 Hb_015852_010 Hb_034661_050--Hb_015852_010 Hb_150263_030--Hb_000108_010 Hb_150263_030--Hb_004375_040 Hb_003589_040 Hb_003589_040 Hb_150263_030--Hb_003589_040 Hb_000967_070 Hb_000967_070 Hb_150263_030--Hb_000967_070 Hb_000108_010--Hb_004375_040 Hb_000108_010--Hb_003589_040 Hb_000108_010--Hb_000967_070 Hb_001975_170 Hb_001975_170 Hb_000108_010--Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_000108_010--Hb_007017_130 Hb_004375_040--Hb_003589_040 Hb_004375_040--Hb_000967_070 Hb_004375_040--Hb_001975_170 Hb_004375_040--Hb_007017_130 Hb_017279_020--Hb_004153_040 Hb_017279_020--Hb_015852_010 Hb_001232_030 Hb_001232_030 Hb_017279_020--Hb_001232_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.110259 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0606477 0

CAGE analysis