Hb_015852_010

Information

Type -
Description -
Location Contig15852: 1-792
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A0A9AN26
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015852_010 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_004153_040 0.0034512989 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001232_030 0.0121359135 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
4 Hb_017279_020 0.0134446022 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
5 Hb_091368_010 0.0226852018 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_034661_050 0.0262350944 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
7 Hb_001544_010 0.0308423396 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025519_010 0.0326767584 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
9 Hb_060231_020 0.034709601 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
10 Hb_000166_010 0.0357699487 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_082864_010 0.0360226183 - - JHL25H03.10 [Jatropha curcas]
12 Hb_042666_010 0.0478986037 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_150263_030 0.0502366124 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000108_010 0.0550640628 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
15 Hb_004375_040 0.0550692989 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
16 Hb_000940_090 0.0557966932 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
17 Hb_003589_040 0.056119445 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
18 Hb_000156_020 0.0576442671 - - PREDICTED: la-related protein 6A [Jatropha curcas]
19 Hb_003176_030 0.0576442671 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
20 Hb_001587_130 0.0587110293 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]

Gene co-expression network

sample Hb_015852_010 Hb_015852_010 Hb_004153_040 Hb_004153_040 Hb_015852_010--Hb_004153_040 Hb_001232_030 Hb_001232_030 Hb_015852_010--Hb_001232_030 Hb_017279_020 Hb_017279_020 Hb_015852_010--Hb_017279_020 Hb_091368_010 Hb_091368_010 Hb_015852_010--Hb_091368_010 Hb_034661_050 Hb_034661_050 Hb_015852_010--Hb_034661_050 Hb_001544_010 Hb_001544_010 Hb_015852_010--Hb_001544_010 Hb_004153_040--Hb_017279_020 Hb_004153_040--Hb_001232_030 Hb_004153_040--Hb_034661_050 Hb_004153_040--Hb_091368_010 Hb_025519_010 Hb_025519_010 Hb_004153_040--Hb_025519_010 Hb_001232_030--Hb_091368_010 Hb_001232_030--Hb_001544_010 Hb_000166_010 Hb_000166_010 Hb_001232_030--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_001232_030--Hb_082864_010 Hb_017279_020--Hb_034661_050 Hb_017279_020--Hb_025519_010 Hb_060231_020 Hb_060231_020 Hb_017279_020--Hb_060231_020 Hb_017279_020--Hb_001232_030 Hb_091368_010--Hb_001544_010 Hb_091368_010--Hb_000166_010 Hb_091368_010--Hb_082864_010 Hb_042666_010 Hb_042666_010 Hb_091368_010--Hb_042666_010 Hb_034661_050--Hb_025519_010 Hb_034661_050--Hb_060231_020 Hb_150263_030 Hb_150263_030 Hb_034661_050--Hb_150263_030 Hb_001544_010--Hb_000166_010 Hb_001544_010--Hb_082864_010 Hb_001544_010--Hb_042666_010 Hb_000940_090 Hb_000940_090 Hb_001544_010--Hb_000940_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0558688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0363869 0

CAGE analysis