Hb_017279_020

Information

Type -
Description -
Location Contig17279: 36152-37623
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04310g
description POPTRDRAFT_775913; MOTHER of FT and TF1 family protein
nr
ID NP_001292938.1
description protein MOTHER of FT and TF 1 [Jatropha curcas]
swissprot
ID Q9XFK7
description Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1
trembl
ID W5RZI8
description MOTHER OF FT AND TFL1 1 OS=Jatropha curcas GN=MFT1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description protein mother of ft and tf 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017279_020 0.0 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
2 Hb_004153_040 0.009993481 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_034661_050 0.0127922497 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
4 Hb_015852_010 0.0134446022 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_025519_010 0.0192354636 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
6 Hb_060231_020 0.0212688893 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
7 Hb_001232_030 0.0255789329 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
8 Hb_091368_010 0.0361256535 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_150263_030 0.0368018714 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000108_010 0.041631735 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
11 Hb_004375_040 0.0416369739 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
12 Hb_003589_040 0.0426876806 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
13 Hb_001544_010 0.0442800599 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000166_010 0.049205708 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_082864_010 0.0494582708 - - JHL25H03.10 [Jatropha curcas]
16 Hb_000967_070 0.0498550233 - - rubber peroxidase 1 [Hevea brasiliensis]
17 Hb_001975_170 0.0607230492 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
18 Hb_042666_010 0.0613285514 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_007017_130 0.0614004351 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
20 Hb_004634_010 0.0633405232 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]

Gene co-expression network

sample Hb_017279_020 Hb_017279_020 Hb_004153_040 Hb_004153_040 Hb_017279_020--Hb_004153_040 Hb_034661_050 Hb_034661_050 Hb_017279_020--Hb_034661_050 Hb_015852_010 Hb_015852_010 Hb_017279_020--Hb_015852_010 Hb_025519_010 Hb_025519_010 Hb_017279_020--Hb_025519_010 Hb_060231_020 Hb_060231_020 Hb_017279_020--Hb_060231_020 Hb_001232_030 Hb_001232_030 Hb_017279_020--Hb_001232_030 Hb_004153_040--Hb_015852_010 Hb_004153_040--Hb_001232_030 Hb_004153_040--Hb_034661_050 Hb_091368_010 Hb_091368_010 Hb_004153_040--Hb_091368_010 Hb_004153_040--Hb_025519_010 Hb_034661_050--Hb_025519_010 Hb_034661_050--Hb_060231_020 Hb_150263_030 Hb_150263_030 Hb_034661_050--Hb_150263_030 Hb_034661_050--Hb_015852_010 Hb_015852_010--Hb_001232_030 Hb_015852_010--Hb_091368_010 Hb_001544_010 Hb_001544_010 Hb_015852_010--Hb_001544_010 Hb_025519_010--Hb_060231_020 Hb_025519_010--Hb_150263_030 Hb_000108_010 Hb_000108_010 Hb_025519_010--Hb_000108_010 Hb_004375_040 Hb_004375_040 Hb_025519_010--Hb_004375_040 Hb_060231_020--Hb_150263_030 Hb_060231_020--Hb_000108_010 Hb_060231_020--Hb_004375_040 Hb_001232_030--Hb_091368_010 Hb_001232_030--Hb_001544_010 Hb_000166_010 Hb_000166_010 Hb_001232_030--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_001232_030--Hb_082864_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0673823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0411231 0

CAGE analysis