Hb_034661_050

Information

Type -
Description -
Location Contig34661: 30841-34647
Sequence    

Annotation

kegg
ID mdm:103430053
description zinc finger MYM-type protein 1-like
nr
ID XP_008366407.1
description PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
swissprot
ID Q5SVZ6
description Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
trembl
ID U5GTY5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s42900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034661_050 0.0 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
2 Hb_025519_010 0.0064438474 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
3 Hb_060231_020 0.0084775626 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
4 Hb_017279_020 0.0127922497 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
5 Hb_004153_040 0.0227845932 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_150263_030 0.0240142044 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015852_010 0.0262350944 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_000108_010 0.0288457381 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
9 Hb_004375_040 0.0288509789 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
10 Hb_003589_040 0.0299020831 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
11 Hb_000967_070 0.0370724658 - - rubber peroxidase 1 [Hevea brasiliensis]
12 Hb_001232_030 0.0383663355 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
13 Hb_001975_170 0.047946215 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
14 Hb_007017_130 0.0486240029 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
15 Hb_091368_010 0.0489092406 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_004634_010 0.050565272 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
17 Hb_099777_010 0.0569185925 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
18 Hb_001544_010 0.0570599904 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000166_010 0.0619831354 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_082864_010 0.062235564 - - JHL25H03.10 [Jatropha curcas]

Gene co-expression network

sample Hb_034661_050 Hb_034661_050 Hb_025519_010 Hb_025519_010 Hb_034661_050--Hb_025519_010 Hb_060231_020 Hb_060231_020 Hb_034661_050--Hb_060231_020 Hb_017279_020 Hb_017279_020 Hb_034661_050--Hb_017279_020 Hb_004153_040 Hb_004153_040 Hb_034661_050--Hb_004153_040 Hb_150263_030 Hb_150263_030 Hb_034661_050--Hb_150263_030 Hb_015852_010 Hb_015852_010 Hb_034661_050--Hb_015852_010 Hb_025519_010--Hb_060231_020 Hb_025519_010--Hb_150263_030 Hb_025519_010--Hb_017279_020 Hb_000108_010 Hb_000108_010 Hb_025519_010--Hb_000108_010 Hb_004375_040 Hb_004375_040 Hb_025519_010--Hb_004375_040 Hb_060231_020--Hb_150263_030 Hb_060231_020--Hb_000108_010 Hb_060231_020--Hb_004375_040 Hb_060231_020--Hb_017279_020 Hb_017279_020--Hb_004153_040 Hb_017279_020--Hb_015852_010 Hb_001232_030 Hb_001232_030 Hb_017279_020--Hb_001232_030 Hb_004153_040--Hb_015852_010 Hb_004153_040--Hb_001232_030 Hb_091368_010 Hb_091368_010 Hb_004153_040--Hb_091368_010 Hb_004153_040--Hb_025519_010 Hb_150263_030--Hb_000108_010 Hb_150263_030--Hb_004375_040 Hb_003589_040 Hb_003589_040 Hb_150263_030--Hb_003589_040 Hb_000967_070 Hb_000967_070 Hb_150263_030--Hb_000967_070 Hb_015852_010--Hb_001232_030 Hb_015852_010--Hb_091368_010 Hb_001544_010 Hb_001544_010 Hb_015852_010--Hb_001544_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0487323 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0279437 0

CAGE analysis