Hb_001232_030

Information

Type -
Description -
Location Contig1232: 7555-8780
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18270g
description POPTRDRAFT_751771; hypothetical protein
nr
ID XP_002298218.2
description hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
swissprot
ID O81755
description Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=3 SV=3
trembl
ID B9GG21
description Peroxidase OS=Populus trichocarpa GN=POPTR_0001s18270g PE=3 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07047: 8578-8868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_030 0.0 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
2 Hb_091368_010 0.0105503658 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_015852_010 0.0121359135 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_004153_040 0.0155869664 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001544_010 0.0187090121 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000166_010 0.0236378142 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
7 Hb_082864_010 0.0238905508 - - JHL25H03.10 [Jatropha curcas]
8 Hb_017279_020 0.0255789329 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
9 Hb_042666_010 0.0357702995 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_034661_050 0.0383663355 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
11 Hb_000940_090 0.043671559 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
12 Hb_025519_010 0.0448058453 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
13 Hb_000156_020 0.0455199507 - - PREDICTED: la-related protein 6A [Jatropha curcas]
14 Hb_003176_030 0.0455199507 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
15 Hb_001587_130 0.0465871981 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_060231_020 0.0468379236 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
17 Hb_000319_100 0.0469210826 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
18 Hb_000283_170 0.0553014837 - - ATP binding protein, putative [Ricinus communis]
19 Hb_008021_020 0.055614833 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
20 Hb_007289_010 0.0557668464 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_001232_030 Hb_001232_030 Hb_091368_010 Hb_091368_010 Hb_001232_030--Hb_091368_010 Hb_015852_010 Hb_015852_010 Hb_001232_030--Hb_015852_010 Hb_004153_040 Hb_004153_040 Hb_001232_030--Hb_004153_040 Hb_001544_010 Hb_001544_010 Hb_001232_030--Hb_001544_010 Hb_000166_010 Hb_000166_010 Hb_001232_030--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_001232_030--Hb_082864_010 Hb_091368_010--Hb_001544_010 Hb_091368_010--Hb_000166_010 Hb_091368_010--Hb_082864_010 Hb_091368_010--Hb_015852_010 Hb_042666_010 Hb_042666_010 Hb_091368_010--Hb_042666_010 Hb_015852_010--Hb_004153_040 Hb_017279_020 Hb_017279_020 Hb_015852_010--Hb_017279_020 Hb_034661_050 Hb_034661_050 Hb_015852_010--Hb_034661_050 Hb_015852_010--Hb_001544_010 Hb_004153_040--Hb_017279_020 Hb_004153_040--Hb_034661_050 Hb_004153_040--Hb_091368_010 Hb_025519_010 Hb_025519_010 Hb_004153_040--Hb_025519_010 Hb_001544_010--Hb_000166_010 Hb_001544_010--Hb_082864_010 Hb_001544_010--Hb_042666_010 Hb_000940_090 Hb_000940_090 Hb_001544_010--Hb_000940_090 Hb_000166_010--Hb_082864_010 Hb_000166_010--Hb_042666_010 Hb_000166_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_000166_010--Hb_000156_020 Hb_082864_010--Hb_042666_010 Hb_082864_010--Hb_000940_090 Hb_082864_010--Hb_000156_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0464215 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320491 0

CAGE analysis