Hb_000156_020

Information

Type -
Description -
Location Contig156: 12430-16663
Sequence    

Annotation

kegg
ID tcc:TCM_029499
description Translation initiation factor eIF-2B subunit delta, putative isoform 1
nr
ID XP_012072101.1
description PREDICTED: la-related protein 6A [Jatropha curcas]
swissprot
ID Q94A38
description La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1
trembl
ID A0A067L1I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04612 PE=4 SV=1
Gene Ontology
ID GO:0044424
description la-related protein 6a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13529: 16101-16927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_020 0.0 - - PREDICTED: la-related protein 6A [Jatropha curcas]
2 Hb_003176_030 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
3 Hb_001587_130 0.0010680523 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
4 Hb_000319_100 0.001402196 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
5 Hb_000940_090 0.0018496996 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
6 Hb_042666_010 0.0097553174 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_000283_170 0.0097902646 - - ATP binding protein, putative [Ricinus communis]
8 Hb_008021_020 0.0101039438 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
9 Hb_007289_010 0.0102561184 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000856_220 0.0175574177 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
11 Hb_002793_010 0.0179773886 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
12 Hb_185830_040 0.0184241136 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
13 Hb_004000_030 0.0195900229 - - putative retrotransposon protein [Phyllostachys edulis]
14 Hb_181803_010 0.0196638194 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_183433_020 0.0208713304 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
16 Hb_170365_010 0.0214725562 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_052135_010 0.0215724721 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
18 Hb_082864_010 0.0216378328 - - JHL25H03.10 [Jatropha curcas]
19 Hb_000166_010 0.0218905785 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_005714_080 0.0233484747 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]

Gene co-expression network

sample Hb_000156_020 Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_000156_020--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_000156_020--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_000156_020--Hb_000319_100 Hb_000940_090 Hb_000940_090 Hb_000156_020--Hb_000940_090 Hb_042666_010 Hb_042666_010 Hb_000156_020--Hb_042666_010 Hb_000283_170 Hb_000283_170 Hb_000156_020--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_001587_130 Hb_000156_020--Hb_000319_100 Hb_000156_020--Hb_000940_090 Hb_000156_020--Hb_042666_010 Hb_000156_020--Hb_000283_170 Hb_001587_130--Hb_000319_100 Hb_001587_130--Hb_003176_030 Hb_001587_130--Hb_000940_090 Hb_001587_130--Hb_000283_170 Hb_008021_020 Hb_008021_020 Hb_001587_130--Hb_008021_020 Hb_000319_100--Hb_003176_030 Hb_000319_100--Hb_000940_090 Hb_000319_100--Hb_000283_170 Hb_000319_100--Hb_008021_020 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_042666_010 Hb_000940_090--Hb_000283_170 Hb_042666_010--Hb_003176_030 Hb_042666_010--Hb_001587_130 Hb_042666_010--Hb_000319_100 Hb_082864_010 Hb_082864_010 Hb_042666_010--Hb_082864_010 Hb_000283_170--Hb_008021_020 Hb_007289_010 Hb_007289_010 Hb_000283_170--Hb_007289_010 Hb_000856_220 Hb_000856_220 Hb_000283_170--Hb_000856_220 Hb_002793_010 Hb_002793_010 Hb_000283_170--Hb_002793_010 Hb_185830_040 Hb_185830_040 Hb_000283_170--Hb_185830_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0264988 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0227142 0

CAGE analysis