Hb_000319_100

Information

Type -
Description -
Location Contig319: 154174-154662
Sequence    

Annotation

kegg
ID cam:101489340
description probable protein Pop3-like
nr
ID XP_012073251.1
description PREDICTED: probable protein Pop3 [Jatropha curcas]
swissprot
ID Q9LUV2
description Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1
trembl
ID A0A067KZ68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06195 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein pop3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000319_100 0.0 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
2 Hb_001587_130 0.0003341438 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_000156_020 0.001402196 - - PREDICTED: la-related protein 6A [Jatropha curcas]
4 Hb_003176_030 0.001402196 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
5 Hb_000940_090 0.0032518926 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
6 Hb_000283_170 0.0083881089 - - ATP binding protein, putative [Ricinus communis]
7 Hb_008021_020 0.008701791 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
8 Hb_007289_010 0.008853967 - - cytochrome P450, putative [Ricinus communis]
9 Hb_042666_010 0.0111574597 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000856_220 0.0161553607 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
11 Hb_002793_010 0.0165753386 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
12 Hb_185830_040 0.0170220712 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
13 Hb_004000_030 0.0181880014 - - putative retrotransposon protein [Phyllostachys edulis]
14 Hb_181803_010 0.0182617993 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_183433_020 0.0194693333 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
16 Hb_170365_010 0.0200705711 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_052135_010 0.0201704891 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
18 Hb_005714_080 0.0219465294 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
19 Hb_082864_010 0.0230397823 - - JHL25H03.10 [Jatropha curcas]
20 Hb_000166_010 0.0232925223 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_000319_100 Hb_000319_100 Hb_001587_130 Hb_001587_130 Hb_000319_100--Hb_001587_130 Hb_000156_020 Hb_000156_020 Hb_000319_100--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_000319_100--Hb_003176_030 Hb_000940_090 Hb_000940_090 Hb_000319_100--Hb_000940_090 Hb_000283_170 Hb_000283_170 Hb_000319_100--Hb_000283_170 Hb_008021_020 Hb_008021_020 Hb_000319_100--Hb_008021_020 Hb_001587_130--Hb_000156_020 Hb_001587_130--Hb_003176_030 Hb_001587_130--Hb_000940_090 Hb_001587_130--Hb_000283_170 Hb_001587_130--Hb_008021_020 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_000940_090 Hb_042666_010 Hb_042666_010 Hb_000156_020--Hb_042666_010 Hb_000156_020--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_000940_090 Hb_000156_020--Hb_042666_010 Hb_000156_020--Hb_000283_170 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_042666_010 Hb_000940_090--Hb_000283_170 Hb_000283_170--Hb_008021_020 Hb_007289_010 Hb_007289_010 Hb_000283_170--Hb_007289_010 Hb_000856_220 Hb_000856_220 Hb_000283_170--Hb_000856_220 Hb_002793_010 Hb_002793_010 Hb_000283_170--Hb_002793_010 Hb_185830_040 Hb_185830_040 Hb_000283_170--Hb_185830_040 Hb_008021_020--Hb_007289_010 Hb_008021_020--Hb_000856_220 Hb_008021_020--Hb_002793_010 Hb_008021_020--Hb_185830_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.571285 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.492947 0

CAGE analysis