Hb_002793_010

Information

Type -
Description -
Location Contig2793: 69-13055
Sequence    

Annotation

kegg
ID egr:104455766
description probable metal-nicotianamine transporter YSL7
nr
ID KHG05118.1
description putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID A0A0B0MSL8
description Putative metal-nicotianamine transporter YSL7-like protein OS=Gossypium arboreum GN=F383_30384 PE=4 SV=1
Gene Ontology
ID GO:0055085
description probable metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002793_010 0.0 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
2 Hb_000856_220 0.000420017 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
3 Hb_185830_040 0.0004467765 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
4 Hb_004000_030 0.0016128321 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_181803_010 0.0016866384 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_183433_020 0.0028943198 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
7 Hb_170365_010 0.0034956372 - - Retrotransposon protein, putative [Theobroma cacao]
8 Hb_052135_010 0.0035955688 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
9 Hb_005714_080 0.0053718707 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
10 Hb_007289_010 0.0077217666 - - cytochrome P450, putative [Ricinus communis]
11 Hb_008021_020 0.0078739435 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
12 Hb_000283_170 0.0081876265 - - ATP binding protein, putative [Ricinus communis]
13 Hb_007227_010 0.009749751 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
14 Hb_000319_100 0.0165753386 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_001587_130 0.0169094497 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_000156_020 0.0179773886 - - PREDICTED: la-related protein 6A [Jatropha curcas]
17 Hb_003176_030 0.0179773886 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
18 Hb_000023_040 0.0192856979 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000940_090 0.0198268578 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
20 Hb_004968_110 0.0210219809 - - hypothetical protein JCGZ_01361 [Jatropha curcas]

Gene co-expression network

sample Hb_002793_010 Hb_002793_010 Hb_000856_220 Hb_000856_220 Hb_002793_010--Hb_000856_220 Hb_185830_040 Hb_185830_040 Hb_002793_010--Hb_185830_040 Hb_004000_030 Hb_004000_030 Hb_002793_010--Hb_004000_030 Hb_181803_010 Hb_181803_010 Hb_002793_010--Hb_181803_010 Hb_183433_020 Hb_183433_020 Hb_002793_010--Hb_183433_020 Hb_170365_010 Hb_170365_010 Hb_002793_010--Hb_170365_010 Hb_000856_220--Hb_185830_040 Hb_000856_220--Hb_004000_030 Hb_000856_220--Hb_181803_010 Hb_000856_220--Hb_183433_020 Hb_000856_220--Hb_170365_010 Hb_185830_040--Hb_004000_030 Hb_185830_040--Hb_181803_010 Hb_185830_040--Hb_183433_020 Hb_185830_040--Hb_170365_010 Hb_004000_030--Hb_181803_010 Hb_004000_030--Hb_183433_020 Hb_004000_030--Hb_170365_010 Hb_052135_010 Hb_052135_010 Hb_004000_030--Hb_052135_010 Hb_181803_010--Hb_183433_020 Hb_181803_010--Hb_170365_010 Hb_181803_010--Hb_052135_010 Hb_183433_020--Hb_170365_010 Hb_183433_020--Hb_052135_010 Hb_005714_080 Hb_005714_080 Hb_183433_020--Hb_005714_080 Hb_170365_010--Hb_052135_010 Hb_170365_010--Hb_005714_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0153479 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0143203 0

CAGE analysis