Hb_052135_010

Information

Type -
Description -
Location Contig52135: 12305-15072
Sequence    

Annotation

kegg
ID rcu:RCOM_1000590
description phytochrome B, putative
nr
ID XP_012084071.1
description PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
swissprot
ID P29130
description Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2
trembl
ID A0A067JVA7
description Phytochrome OS=Jatropha curcas GN=JCGZ_18991 PE=3 SV=1
Gene Ontology
ID GO:0005622
description phytochrome b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052135_010 0.0 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
2 Hb_170365_010 9.99321e-05 - - Retrotransposon protein, putative [Theobroma cacao]
3 Hb_183433_020 0.0007012516 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
4 Hb_005714_080 0.0017763137 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
5 Hb_181803_010 0.0019089345 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_004000_030 0.0019827408 - - putative retrotransposon protein [Phyllostachys edulis]
7 Hb_185830_040 0.0031487941 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
8 Hb_002793_010 0.0035955688 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
9 Hb_000856_220 0.0040155838 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
10 Hb_007227_010 0.006154257 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
11 Hb_007289_010 0.0113172263 - - cytochrome P450, putative [Ricinus communis]
12 Hb_008021_020 0.0114693995 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
13 Hb_000283_170 0.0117830748 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000023_040 0.0156905064 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004968_110 0.0174268688 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
16 Hb_000319_100 0.0201704891 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
17 Hb_001587_130 0.0205045847 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
18 Hb_000156_020 0.0215724721 - - PREDICTED: la-related protein 6A [Jatropha curcas]
19 Hb_003176_030 0.0215724721 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
20 Hb_000940_090 0.0234218454 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]

Gene co-expression network

sample Hb_052135_010 Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_052135_010--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_052135_010--Hb_183433_020 Hb_005714_080 Hb_005714_080 Hb_052135_010--Hb_005714_080 Hb_181803_010 Hb_181803_010 Hb_052135_010--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_052135_010--Hb_004000_030 Hb_185830_040 Hb_185830_040 Hb_052135_010--Hb_185830_040 Hb_170365_010--Hb_183433_020 Hb_170365_010--Hb_181803_010 Hb_170365_010--Hb_005714_080 Hb_170365_010--Hb_004000_030 Hb_170365_010--Hb_185830_040 Hb_183433_020--Hb_181803_010 Hb_183433_020--Hb_004000_030 Hb_183433_020--Hb_185830_040 Hb_183433_020--Hb_005714_080 Hb_005714_080--Hb_181803_010 Hb_005714_080--Hb_004000_030 Hb_007227_010 Hb_007227_010 Hb_005714_080--Hb_007227_010 Hb_181803_010--Hb_004000_030 Hb_181803_010--Hb_185830_040 Hb_002793_010 Hb_002793_010 Hb_181803_010--Hb_002793_010 Hb_004000_030--Hb_185830_040 Hb_004000_030--Hb_002793_010 Hb_185830_040--Hb_002793_010 Hb_000856_220 Hb_000856_220 Hb_185830_040--Hb_000856_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0132303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0125554 0

CAGE analysis