Hb_007227_010

Information

Type -
Description -
Location Contig7227: 4242-6415
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDI46638.1
description hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
swissprot
ID -
description -
trembl
ID U6EPK5
description Uncharacterized protein OS=Lactococcus lactis subsp. lactis Dephy 1 GN=BN927_00890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55731: 6175-6653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007227_010 0.0 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
2 Hb_005714_080 0.0043779599 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
3 Hb_052135_010 0.006154257 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
4 Hb_170365_010 0.0062541877 - - Retrotransposon protein, putative [Theobroma cacao]
5 Hb_183433_020 0.0068554983 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
6 Hb_181803_010 0.0080631586 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_004000_030 0.0081369633 - - putative retrotransposon protein [Phyllostachys edulis]
8 Hb_185830_040 0.0093029885 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
9 Hb_000023_040 0.0095365686 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002793_010 0.009749751 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
11 Hb_000856_220 0.0101697536 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
12 Hb_004968_110 0.0112730309 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
13 Hb_001357_370 0.0174667931 - - -
14 Hb_007289_010 0.0174710607 - - cytochrome P450, putative [Ricinus communis]
15 Hb_008021_020 0.0176232246 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
16 Hb_000283_170 0.0179368801 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000319_100 0.0263236105 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
18 Hb_001587_130 0.0266576726 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_000156_020 0.0277254497 - - PREDICTED: la-related protein 6A [Jatropha curcas]
20 Hb_003176_030 0.0277254497 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_007227_010 Hb_007227_010 Hb_005714_080 Hb_005714_080 Hb_007227_010--Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_007227_010--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_007227_010--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_007227_010--Hb_183433_020 Hb_181803_010 Hb_181803_010 Hb_007227_010--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_007227_010--Hb_004000_030 Hb_005714_080--Hb_052135_010 Hb_005714_080--Hb_170365_010 Hb_005714_080--Hb_183433_020 Hb_005714_080--Hb_181803_010 Hb_005714_080--Hb_004000_030 Hb_052135_010--Hb_170365_010 Hb_052135_010--Hb_183433_020 Hb_052135_010--Hb_181803_010 Hb_052135_010--Hb_004000_030 Hb_185830_040 Hb_185830_040 Hb_052135_010--Hb_185830_040 Hb_170365_010--Hb_183433_020 Hb_170365_010--Hb_181803_010 Hb_170365_010--Hb_004000_030 Hb_170365_010--Hb_185830_040 Hb_183433_020--Hb_181803_010 Hb_183433_020--Hb_004000_030 Hb_183433_020--Hb_185830_040 Hb_181803_010--Hb_004000_030 Hb_181803_010--Hb_185830_040 Hb_002793_010 Hb_002793_010 Hb_181803_010--Hb_002793_010 Hb_004000_030--Hb_185830_040 Hb_004000_030--Hb_002793_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.117413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.114701 0

CAGE analysis