Hb_005714_080

Information

Type transcription factor
Description TF Family: B3
Location Contig5714: 57126-57509
Sequence    

Annotation

kegg
ID rcu:RCOM_1375440
description hypothetical protein
nr
ID XP_011002455.1
description PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SSP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_080 0.0 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
2 Hb_052135_010 0.0017763137 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
3 Hb_170365_010 0.0018762457 - - Retrotransposon protein, putative [Theobroma cacao]
4 Hb_183433_020 0.0024775642 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
5 Hb_181803_010 0.0036852438 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_004000_030 0.0037590499 - - putative retrotransposon protein [Phyllostachys edulis]
7 Hb_007227_010 0.0043779599 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
8 Hb_185830_040 0.0049250983 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
9 Hb_002793_010 0.0053718707 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
10 Hb_000856_220 0.0057918831 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
11 Hb_007289_010 0.0130934485 - - cytochrome P450, putative [Ricinus communis]
12 Hb_008021_020 0.0132456195 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
13 Hb_000283_170 0.0135592899 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000023_040 0.0139143271 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004968_110 0.015650723 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
16 Hb_001357_370 0.0218441741 - - -
17 Hb_000319_100 0.0219465294 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
18 Hb_001587_130 0.0222806163 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_000156_020 0.0233484747 - - PREDICTED: la-related protein 6A [Jatropha curcas]
20 Hb_003176_030 0.0233484747 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_005714_080 Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_005714_080--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_005714_080--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_005714_080--Hb_183433_020 Hb_181803_010 Hb_181803_010 Hb_005714_080--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_005714_080--Hb_004000_030 Hb_007227_010 Hb_007227_010 Hb_005714_080--Hb_007227_010 Hb_052135_010--Hb_170365_010 Hb_052135_010--Hb_183433_020 Hb_052135_010--Hb_181803_010 Hb_052135_010--Hb_004000_030 Hb_185830_040 Hb_185830_040 Hb_052135_010--Hb_185830_040 Hb_170365_010--Hb_183433_020 Hb_170365_010--Hb_181803_010 Hb_170365_010--Hb_004000_030 Hb_170365_010--Hb_185830_040 Hb_183433_020--Hb_181803_010 Hb_183433_020--Hb_004000_030 Hb_183433_020--Hb_185830_040 Hb_181803_010--Hb_004000_030 Hb_181803_010--Hb_185830_040 Hb_002793_010 Hb_002793_010 Hb_181803_010--Hb_002793_010 Hb_004000_030--Hb_185830_040 Hb_004000_030--Hb_002793_010 Hb_007227_010--Hb_052135_010 Hb_007227_010--Hb_170365_010 Hb_007227_010--Hb_183433_020 Hb_007227_010--Hb_181803_010 Hb_007227_010--Hb_004000_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.153124 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.146534 0

CAGE analysis