Hb_082864_010

Information

Type -
Description -
Location Contig82864: 606-887
Sequence    

Annotation

kegg
ID rcu:RCOM_0897890
description hypothetical protein
nr
ID BAJ53247.1
description JHL25H03.10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUD7
description JHL25H03.10 protein OS=Jatropha curcas GN=JHL25H03.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082864_010 0.0 - - JHL25H03.10 [Jatropha curcas]
2 Hb_000166_010 0.0002527882 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_001544_010 0.0051823786 - - conserved hypothetical protein [Ricinus communis]
4 Hb_042666_010 0.0118834028 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_091368_010 0.0133414089 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_000940_090 0.0197884127 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
7 Hb_000156_020 0.0216378328 - - PREDICTED: la-related protein 6A [Jatropha curcas]
8 Hb_003176_030 0.0216378328 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
9 Hb_001587_130 0.0227057001 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_000319_100 0.0230397823 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
11 Hb_001232_030 0.0238905508 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
12 Hb_000283_170 0.0314257556 - - ATP binding protein, putative [Ricinus communis]
13 Hb_008021_020 0.0317393359 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
14 Hb_007289_010 0.0318914619 - - cytochrome P450, putative [Ricinus communis]
15 Hb_015852_010 0.0360226183 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
16 Hb_000856_220 0.0391900239 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
17 Hb_004153_040 0.0394720944 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002793_010 0.0396098129 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
19 Hb_185830_040 0.0400563416 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
20 Hb_004000_030 0.0412217247 - - putative retrotransposon protein [Phyllostachys edulis]

Gene co-expression network

sample Hb_082864_010 Hb_082864_010 Hb_000166_010 Hb_000166_010 Hb_082864_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_082864_010--Hb_001544_010 Hb_042666_010 Hb_042666_010 Hb_082864_010--Hb_042666_010 Hb_091368_010 Hb_091368_010 Hb_082864_010--Hb_091368_010 Hb_000940_090 Hb_000940_090 Hb_082864_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_082864_010--Hb_000156_020 Hb_000166_010--Hb_001544_010 Hb_000166_010--Hb_042666_010 Hb_000166_010--Hb_091368_010 Hb_000166_010--Hb_000940_090 Hb_000166_010--Hb_000156_020 Hb_001544_010--Hb_091368_010 Hb_001544_010--Hb_042666_010 Hb_001232_030 Hb_001232_030 Hb_001544_010--Hb_001232_030 Hb_001544_010--Hb_000940_090 Hb_042666_010--Hb_000940_090 Hb_042666_010--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_042666_010--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_042666_010--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_042666_010--Hb_000319_100 Hb_091368_010--Hb_001232_030 Hb_015852_010 Hb_015852_010 Hb_091368_010--Hb_015852_010 Hb_091368_010--Hb_042666_010 Hb_000940_090--Hb_000156_020 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_001587_130 Hb_000940_090--Hb_000319_100 Hb_000283_170 Hb_000283_170 Hb_000940_090--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_001587_130 Hb_000156_020--Hb_000319_100 Hb_000156_020--Hb_000283_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.627621 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.485591 0

CAGE analysis