Hb_000166_010

Information

Type -
Description -
Location Contig166: 30296-31217
Sequence    

Annotation

kegg
ID tcc:TCM_007393
description Hydroxyproline-rich glycoprotein family protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000166_010 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_082864_010 0.0002527882 - - JHL25H03.10 [Jatropha curcas]
3 Hb_001544_010 0.0049295927 - - conserved hypothetical protein [Ricinus communis]
4 Hb_042666_010 0.012136178 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_091368_010 0.0130886366 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_000940_090 0.0200411653 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
7 Hb_000156_020 0.0218905785 - - PREDICTED: la-related protein 6A [Jatropha curcas]
8 Hb_003176_030 0.0218905785 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
9 Hb_001587_130 0.0229584415 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_000319_100 0.0232925223 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
11 Hb_001232_030 0.0236378142 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
12 Hb_000283_170 0.0316784547 - - ATP binding protein, putative [Ricinus communis]
13 Hb_008021_020 0.0319920332 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
14 Hb_007289_010 0.0321441584 - - cytochrome P450, putative [Ricinus communis]
15 Hb_015852_010 0.0357699487 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
16 Hb_004153_040 0.0392194488 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000856_220 0.039442674 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
18 Hb_002793_010 0.0398624602 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
19 Hb_185830_040 0.0403089857 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
20 Hb_004000_030 0.0414743603 - - putative retrotransposon protein [Phyllostachys edulis]

Gene co-expression network

sample Hb_000166_010 Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_000166_010--Hb_082864_010 Hb_001544_010 Hb_001544_010 Hb_000166_010--Hb_001544_010 Hb_042666_010 Hb_042666_010 Hb_000166_010--Hb_042666_010 Hb_091368_010 Hb_091368_010 Hb_000166_010--Hb_091368_010 Hb_000940_090 Hb_000940_090 Hb_000166_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_000166_010--Hb_000156_020 Hb_082864_010--Hb_001544_010 Hb_082864_010--Hb_042666_010 Hb_082864_010--Hb_091368_010 Hb_082864_010--Hb_000940_090 Hb_082864_010--Hb_000156_020 Hb_001544_010--Hb_091368_010 Hb_001544_010--Hb_042666_010 Hb_001232_030 Hb_001232_030 Hb_001544_010--Hb_001232_030 Hb_001544_010--Hb_000940_090 Hb_042666_010--Hb_000940_090 Hb_042666_010--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_042666_010--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_042666_010--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_042666_010--Hb_000319_100 Hb_091368_010--Hb_001232_030 Hb_015852_010 Hb_015852_010 Hb_091368_010--Hb_015852_010 Hb_091368_010--Hb_042666_010 Hb_000940_090--Hb_000156_020 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_001587_130 Hb_000940_090--Hb_000319_100 Hb_000283_170 Hb_000283_170 Hb_000940_090--Hb_000283_170 Hb_000156_020--Hb_003176_030 Hb_000156_020--Hb_001587_130 Hb_000156_020--Hb_000319_100 Hb_000156_020--Hb_000283_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0300413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0232151 0

CAGE analysis