Hb_001544_010

Information

Type -
Description -
Location Contig1544: 25235-25477
Sequence    

Annotation

kegg
ID rcu:RCOM_0842660
description hypothetical protein
nr
ID XP_002526011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJ42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0842660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000166_010 0.0049295927 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_082864_010 0.0051823786 - - JHL25H03.10 [Jatropha curcas]
4 Hb_091368_010 0.0081592339 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_042666_010 0.0170654061 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_001232_030 0.0187090121 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
7 Hb_000940_090 0.0249698795 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
8 Hb_000156_020 0.0268191413 - - PREDICTED: la-related protein 6A [Jatropha curcas]
9 Hb_003176_030 0.0268191413 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
10 Hb_001587_130 0.0278869114 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
11 Hb_000319_100 0.0282209624 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
12 Hb_015852_010 0.0308423396 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_004153_040 0.0342922785 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000283_170 0.03660602 - - ATP binding protein, putative [Ricinus communis]
15 Hb_008021_020 0.0369195611 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
16 Hb_007289_010 0.0370716681 - - cytochrome P450, putative [Ricinus communis]
17 Hb_017279_020 0.0442800599 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
18 Hb_000856_220 0.0443692148 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
19 Hb_002793_010 0.0447889397 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
20 Hb_185830_040 0.0452353994 - - hypothetical protein JCGZ_16423 [Jatropha curcas]

Gene co-expression network

sample Hb_001544_010 Hb_001544_010 Hb_000166_010 Hb_000166_010 Hb_001544_010--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_001544_010--Hb_082864_010 Hb_091368_010 Hb_091368_010 Hb_001544_010--Hb_091368_010 Hb_042666_010 Hb_042666_010 Hb_001544_010--Hb_042666_010 Hb_001232_030 Hb_001232_030 Hb_001544_010--Hb_001232_030 Hb_000940_090 Hb_000940_090 Hb_001544_010--Hb_000940_090 Hb_000166_010--Hb_082864_010 Hb_000166_010--Hb_042666_010 Hb_000166_010--Hb_091368_010 Hb_000166_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_000166_010--Hb_000156_020 Hb_082864_010--Hb_042666_010 Hb_082864_010--Hb_091368_010 Hb_082864_010--Hb_000940_090 Hb_082864_010--Hb_000156_020 Hb_091368_010--Hb_001232_030 Hb_015852_010 Hb_015852_010 Hb_091368_010--Hb_015852_010 Hb_091368_010--Hb_042666_010 Hb_042666_010--Hb_000940_090 Hb_042666_010--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_042666_010--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_042666_010--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_042666_010--Hb_000319_100 Hb_001232_030--Hb_015852_010 Hb_004153_040 Hb_004153_040 Hb_001232_030--Hb_004153_040 Hb_001232_030--Hb_000166_010 Hb_001232_030--Hb_082864_010 Hb_000940_090--Hb_000156_020 Hb_000940_090--Hb_003176_030 Hb_000940_090--Hb_001587_130 Hb_000940_090--Hb_000319_100 Hb_000283_170 Hb_000283_170 Hb_000940_090--Hb_000283_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.69867 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28229 0

CAGE analysis