Hb_007017_130

Information

Type -
Description -
Location Contig7017: 136898-138499
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06390g
description POPTRDRAFT_777273; hypothetical protein
nr
ID XP_011042512.1
description PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
swissprot
ID O80437
description Glycerol-3-phosphate 2-O-acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1
trembl
ID B9IIF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06390g PE=4 SV=2
Gene Ontology
ID GO:0004366
description glycerol-3-phosphate 2-o-acyltransferase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_130 0.0 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
2 Hb_001975_170 0.0006784825 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
3 Hb_004634_010 0.0019433731 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
4 Hb_099777_010 0.0083047773 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
5 Hb_000967_070 0.0115605879 - - rubber peroxidase 1 [Hevea brasiliensis]
6 Hb_003589_040 0.0187336654 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
7 Hb_000996_090 0.0192930091 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
8 Hb_004375_040 0.0197849803 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
9 Hb_000108_010 0.019790222 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
10 Hb_150263_030 0.0246221248 - - conserved hypothetical protein [Ricinus communis]
11 Hb_060231_020 0.0401534313 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
12 Hb_025519_010 0.0421857277 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
13 Hb_034661_050 0.0486240029 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
14 Hb_017226_020 0.0491671328 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
15 Hb_034507_020 0.0503011253 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_017279_020 0.0614004351 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
17 Hb_005656_020 0.0657188371 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
18 Hb_001424_050 0.0671959669 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
19 Hb_004153_040 0.0713761359 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_175976_020 0.0731393077 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007017_130 Hb_007017_130 Hb_001975_170 Hb_001975_170 Hb_007017_130--Hb_001975_170 Hb_004634_010 Hb_004634_010 Hb_007017_130--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_007017_130--Hb_099777_010 Hb_000967_070 Hb_000967_070 Hb_007017_130--Hb_000967_070 Hb_003589_040 Hb_003589_040 Hb_007017_130--Hb_003589_040 Hb_000996_090 Hb_000996_090 Hb_007017_130--Hb_000996_090 Hb_001975_170--Hb_004634_010 Hb_001975_170--Hb_099777_010 Hb_001975_170--Hb_000967_070 Hb_001975_170--Hb_003589_040 Hb_004375_040 Hb_004375_040 Hb_001975_170--Hb_004375_040 Hb_004634_010--Hb_099777_010 Hb_004634_010--Hb_000967_070 Hb_004634_010--Hb_000996_090 Hb_004634_010--Hb_003589_040 Hb_099777_010--Hb_000996_090 Hb_099777_010--Hb_000967_070 Hb_099777_010--Hb_003589_040 Hb_000967_070--Hb_003589_040 Hb_000967_070--Hb_004375_040 Hb_000108_010 Hb_000108_010 Hb_000967_070--Hb_000108_010 Hb_150263_030 Hb_150263_030 Hb_000967_070--Hb_150263_030 Hb_003589_040--Hb_004375_040 Hb_003589_040--Hb_000108_010 Hb_003589_040--Hb_150263_030 Hb_000996_090--Hb_001975_170 Hb_017226_020 Hb_017226_020 Hb_000996_090--Hb_017226_020 Hb_000996_090--Hb_000967_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0216942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00976138 0

CAGE analysis