Hb_000996_090

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig996: 118683-119033
Sequence    

Annotation

kegg
ID rcu:RCOM_1686190
description ccaat-binding transcription factor, putative
nr
ID XP_002509772.1
description ccaat-binding transcription factor, putative [Ricinus communis]
swissprot
ID Q9ZVL3
description Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1
trembl
ID B9RC88
description Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_1686190 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_090 0.0 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
2 Hb_099777_010 0.0109890735 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
3 Hb_004634_010 0.0173499447 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
4 Hb_007017_130 0.0192930091 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
5 Hb_001975_170 0.0199713679 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
6 Hb_017226_020 0.0298883687 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
7 Hb_000967_070 0.0308503826 - - rubber peroxidase 1 [Hevea brasiliensis]
8 Hb_034507_020 0.0310232648 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_003589_040 0.038020307 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
10 Hb_004375_040 0.0390710869 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
11 Hb_000108_010 0.0390763259 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
12 Hb_150263_030 0.0439055332 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005656_020 0.0464560519 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
14 Hb_001424_050 0.0479349055 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_175976_020 0.0538856903 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
16 Hb_060231_020 0.0594256084 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
17 Hb_025519_010 0.0614561524 - - PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]
18 Hb_142461_010 0.0616441222 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_034661_050 0.0678884546 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
20 Hb_000819_050 0.0751206092 - - hypothetical protein Csa_4G290160 [Cucumis sativus]

Gene co-expression network

sample Hb_000996_090 Hb_000996_090 Hb_099777_010 Hb_099777_010 Hb_000996_090--Hb_099777_010 Hb_004634_010 Hb_004634_010 Hb_000996_090--Hb_004634_010 Hb_007017_130 Hb_007017_130 Hb_000996_090--Hb_007017_130 Hb_001975_170 Hb_001975_170 Hb_000996_090--Hb_001975_170 Hb_017226_020 Hb_017226_020 Hb_000996_090--Hb_017226_020 Hb_000967_070 Hb_000967_070 Hb_000996_090--Hb_000967_070 Hb_099777_010--Hb_004634_010 Hb_099777_010--Hb_007017_130 Hb_099777_010--Hb_001975_170 Hb_099777_010--Hb_000967_070 Hb_003589_040 Hb_003589_040 Hb_099777_010--Hb_003589_040 Hb_004634_010--Hb_007017_130 Hb_004634_010--Hb_001975_170 Hb_004634_010--Hb_000967_070 Hb_004634_010--Hb_003589_040 Hb_007017_130--Hb_001975_170 Hb_007017_130--Hb_000967_070 Hb_007017_130--Hb_003589_040 Hb_001975_170--Hb_000967_070 Hb_001975_170--Hb_003589_040 Hb_004375_040 Hb_004375_040 Hb_001975_170--Hb_004375_040 Hb_034507_020 Hb_034507_020 Hb_017226_020--Hb_034507_020 Hb_005656_020 Hb_005656_020 Hb_017226_020--Hb_005656_020 Hb_001424_050 Hb_001424_050 Hb_017226_020--Hb_001424_050 Hb_175976_020 Hb_175976_020 Hb_017226_020--Hb_175976_020 Hb_142461_010 Hb_142461_010 Hb_017226_020--Hb_142461_010 Hb_000967_070--Hb_003589_040 Hb_000967_070--Hb_004375_040 Hb_000108_010 Hb_000108_010 Hb_000967_070--Hb_000108_010 Hb_150263_030 Hb_150263_030 Hb_000967_070--Hb_150263_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.222011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0904634 0

CAGE analysis