Hb_005656_020

Information

Type -
Description -
Location Contig5656: 12028-12570
Sequence    

Annotation

kegg
ID obr:102707106
description uncharacterized LOC102707106
nr
ID XP_006651032.1
description PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID J3N9B0
description Uncharacterized protein OS=Oryza brachyantha GN=OB11G23960 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_020 0.0 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
2 Hb_001424_050 0.0014807067 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
3 Hb_175976_020 0.0074401947 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
4 Hb_142461_010 0.0152130382 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_034507_020 0.0154450048 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_017226_020 0.0165802993 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
7 Hb_000819_050 0.028723137 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
8 Hb_023280_020 0.0317436312 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
9 Hb_000345_520 0.0331028646 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
10 Hb_000483_290 0.0455482643 - - PREDICTED: ankyrin-1-like [Prunus mume]
11 Hb_010681_020 0.0457796588 - - JHL22C18.10 [Jatropha curcas]
12 Hb_000996_090 0.0464560519 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
13 Hb_007101_240 0.0467909079 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000421_150 0.047967997 - - Zinc finger protein GIS2 [Medicago truncatula]
15 Hb_099777_010 0.0574299182 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
16 Hb_000045_100 0.0609220303 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004634_010 0.0637795523 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
18 Hb_007017_130 0.0657188371 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
19 Hb_001975_170 0.0663958386 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
20 Hb_033273_010 0.0680108777 - - -

Gene co-expression network

sample Hb_005656_020 Hb_005656_020 Hb_001424_050 Hb_001424_050 Hb_005656_020--Hb_001424_050 Hb_175976_020 Hb_175976_020 Hb_005656_020--Hb_175976_020 Hb_142461_010 Hb_142461_010 Hb_005656_020--Hb_142461_010 Hb_034507_020 Hb_034507_020 Hb_005656_020--Hb_034507_020 Hb_017226_020 Hb_017226_020 Hb_005656_020--Hb_017226_020 Hb_000819_050 Hb_000819_050 Hb_005656_020--Hb_000819_050 Hb_001424_050--Hb_175976_020 Hb_001424_050--Hb_142461_010 Hb_001424_050--Hb_034507_020 Hb_001424_050--Hb_017226_020 Hb_001424_050--Hb_000819_050 Hb_175976_020--Hb_142461_010 Hb_175976_020--Hb_000819_050 Hb_175976_020--Hb_034507_020 Hb_175976_020--Hb_017226_020 Hb_142461_010--Hb_000819_050 Hb_023280_020 Hb_023280_020 Hb_142461_010--Hb_023280_020 Hb_000345_520 Hb_000345_520 Hb_142461_010--Hb_000345_520 Hb_034507_020--Hb_017226_020 Hb_034507_020--Hb_142461_010 Hb_000996_090 Hb_000996_090 Hb_034507_020--Hb_000996_090 Hb_017226_020--Hb_000996_090 Hb_017226_020--Hb_142461_010 Hb_000819_050--Hb_023280_020 Hb_000819_050--Hb_000345_520 Hb_000483_290 Hb_000483_290 Hb_000819_050--Hb_000483_290 Hb_010681_020 Hb_010681_020 Hb_000819_050--Hb_010681_020 Hb_007101_240 Hb_007101_240 Hb_000819_050--Hb_007101_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.119979 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0381442 0

CAGE analysis