Hb_007455_010

Information

Type -
Description -
Location Contig7455: 33-2445
Sequence    

Annotation

kegg
ID tcc:TCM_003025
description DNA/RNA polymerases superfamily protein
nr
ID XP_012487798.1
description PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061DME7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003025 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007455_010 0.0 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
2 Hb_051677_010 0.0036546535 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
3 Hb_002391_060 0.0044525465 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
4 Hb_002792_040 0.0149902778 - - -
5 Hb_025161_040 0.0159173252 - - kinase, putative [Ricinus communis]
6 Hb_002281_030 0.019392954 - - -
7 Hb_000029_240 0.0225378307 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
8 Hb_065272_010 0.0276880225 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
9 Hb_002092_050 0.0319428864 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
10 Hb_000552_040 0.0335974012 - - -
11 Hb_000331_600 0.0346428278 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
12 Hb_012090_010 0.0374645875 - - hypothetical protein RCOM_0904330 [Ricinus communis]
13 Hb_000313_240 0.0379939618 - - hypothetical protein RCOM_0377590 [Ricinus communis]
14 Hb_001950_050 0.0402925046 - - -
15 Hb_001304_150 0.0499672443 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_154146_010 0.0528028415 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
17 Hb_033273_010 0.0539537841 - - -
18 Hb_000045_100 0.0610427106 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001278_010 0.0731721201 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000421_150 0.0739716364 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_007455_010 Hb_007455_010 Hb_051677_010 Hb_051677_010 Hb_007455_010--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_007455_010--Hb_002391_060 Hb_002792_040 Hb_002792_040 Hb_007455_010--Hb_002792_040 Hb_025161_040 Hb_025161_040 Hb_007455_010--Hb_025161_040 Hb_002281_030 Hb_002281_030 Hb_007455_010--Hb_002281_030 Hb_000029_240 Hb_000029_240 Hb_007455_010--Hb_000029_240 Hb_051677_010--Hb_002391_060 Hb_051677_010--Hb_025161_040 Hb_051677_010--Hb_002792_040 Hb_051677_010--Hb_000029_240 Hb_051677_010--Hb_002281_030 Hb_002391_060--Hb_025161_040 Hb_002391_060--Hb_000029_240 Hb_002391_060--Hb_002792_040 Hb_065272_010 Hb_065272_010 Hb_002391_060--Hb_065272_010 Hb_002792_040--Hb_002281_030 Hb_000552_040 Hb_000552_040 Hb_002792_040--Hb_000552_040 Hb_001950_050 Hb_001950_050 Hb_002792_040--Hb_001950_050 Hb_025161_040--Hb_000029_240 Hb_025161_040--Hb_065272_010 Hb_002092_050 Hb_002092_050 Hb_025161_040--Hb_002092_050 Hb_002281_030--Hb_000552_040 Hb_002281_030--Hb_001950_050 Hb_002281_030--Hb_002391_060 Hb_000029_240--Hb_065272_010 Hb_000029_240--Hb_002092_050 Hb_000331_600 Hb_000331_600 Hb_000029_240--Hb_000331_600 Hb_012090_010 Hb_012090_010 Hb_000029_240--Hb_012090_010 Hb_000313_240 Hb_000313_240 Hb_000029_240--Hb_000313_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.072589 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0108982 0

CAGE analysis