Hb_000029_240

Information

Type -
Description -
Location Contig29: 228121-228477
Sequence    

Annotation

kegg
ID gtt:GUITHDRAFT_86615
description hypothetical protein
nr
ID XP_010934322.1
description PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A0A0C4DGD2
description Pre-mRNA-splicing factor SLU7 (Fragment) OS=Homo sapiens GN=SLU7 PE=1 SV=1
Gene Ontology
ID GO:0005634
description pre-mrna-splicing factor slu7-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_240 0.0 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
2 Hb_065272_010 0.0051544496 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
3 Hb_025161_040 0.0066235658 - - kinase, putative [Ricinus communis]
4 Hb_002092_050 0.0094141173 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
5 Hb_000331_600 0.0121177276 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
6 Hb_012090_010 0.0149438485 - - hypothetical protein RCOM_0904330 [Ricinus communis]
7 Hb_000313_240 0.0154741018 - - hypothetical protein RCOM_0377590 [Ricinus communis]
8 Hb_002391_060 0.0180875608 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
9 Hb_051677_010 0.0188851247 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
10 Hb_007455_010 0.0225378307 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
11 Hb_001304_150 0.0274725826 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_154146_010 0.0303156926 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
13 Hb_002792_040 0.0375129013 - - -
14 Hb_002281_030 0.0419090228 - - -
15 Hb_001278_010 0.0507577978 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000355_020 0.0531207422 - - -
17 Hb_000552_040 0.0560863554 - - -
18 Hb_020712_020 0.0623057901 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
19 Hb_001950_050 0.0627657051 - - -
20 Hb_025526_110 0.0710654271 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_240 Hb_000029_240 Hb_065272_010 Hb_065272_010 Hb_000029_240--Hb_065272_010 Hb_025161_040 Hb_025161_040 Hb_000029_240--Hb_025161_040 Hb_002092_050 Hb_002092_050 Hb_000029_240--Hb_002092_050 Hb_000331_600 Hb_000331_600 Hb_000029_240--Hb_000331_600 Hb_012090_010 Hb_012090_010 Hb_000029_240--Hb_012090_010 Hb_000313_240 Hb_000313_240 Hb_000029_240--Hb_000313_240 Hb_065272_010--Hb_002092_050 Hb_065272_010--Hb_000331_600 Hb_065272_010--Hb_012090_010 Hb_065272_010--Hb_000313_240 Hb_065272_010--Hb_025161_040 Hb_002391_060 Hb_002391_060 Hb_025161_040--Hb_002391_060 Hb_051677_010 Hb_051677_010 Hb_025161_040--Hb_051677_010 Hb_007455_010 Hb_007455_010 Hb_025161_040--Hb_007455_010 Hb_025161_040--Hb_002092_050 Hb_002092_050--Hb_000331_600 Hb_002092_050--Hb_012090_010 Hb_002092_050--Hb_000313_240 Hb_000331_600--Hb_012090_010 Hb_000331_600--Hb_000313_240 Hb_001304_150 Hb_001304_150 Hb_000331_600--Hb_001304_150 Hb_012090_010--Hb_000313_240 Hb_012090_010--Hb_001304_150 Hb_000313_240--Hb_001304_150 Hb_154146_010 Hb_154146_010 Hb_000313_240--Hb_154146_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.78933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.355996 0

CAGE analysis