Hb_000313_240

Information

Type -
Description -
Location Contig313: 336141-337122
Sequence    

Annotation

kegg
ID rcu:RCOM_0377590
description hypothetical protein
nr
ID XP_002534506.1
description hypothetical protein RCOM_0377590 [Ricinus communis]
swissprot
ID Q9FGW0
description Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1
trembl
ID B9T8D7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0377590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_240 0.0 - - hypothetical protein RCOM_0377590 [Ricinus communis]
2 Hb_012090_010 0.0005304356 - - hypothetical protein RCOM_0904330 [Ricinus communis]
3 Hb_000331_600 0.0033573031 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
4 Hb_002092_050 0.0060612788 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
5 Hb_065272_010 0.0103208463 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
6 Hb_001304_150 0.012006306 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_154146_010 0.014852349 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
8 Hb_000029_240 0.0154741018 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
9 Hb_025161_040 0.0220944759 - - kinase, putative [Ricinus communis]
10 Hb_002391_060 0.0335487907 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
11 Hb_051677_010 0.0343454942 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
12 Hb_001278_010 0.0353288157 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000355_020 0.037697331 - - -
14 Hb_007455_010 0.0379939618 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
15 Hb_020712_020 0.0469074334 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
16 Hb_002792_040 0.0529467825 - - -
17 Hb_025526_110 0.0556962549 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
18 Hb_002281_030 0.0573349696 - - -
19 Hb_041188_010 0.0590106233 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
20 Hb_002368_120 0.071135019 - - hypothetical protein VITISV_033181 [Vitis vinifera]

Gene co-expression network

sample Hb_000313_240 Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_000313_240--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_000313_240--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_000313_240--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_000313_240--Hb_065272_010 Hb_001304_150 Hb_001304_150 Hb_000313_240--Hb_001304_150 Hb_154146_010 Hb_154146_010 Hb_000313_240--Hb_154146_010 Hb_012090_010--Hb_000331_600 Hb_012090_010--Hb_002092_050 Hb_012090_010--Hb_065272_010 Hb_012090_010--Hb_001304_150 Hb_000029_240 Hb_000029_240 Hb_012090_010--Hb_000029_240 Hb_000331_600--Hb_002092_050 Hb_000331_600--Hb_065272_010 Hb_000331_600--Hb_000029_240 Hb_000331_600--Hb_001304_150 Hb_002092_050--Hb_065272_010 Hb_002092_050--Hb_000029_240 Hb_025161_040 Hb_025161_040 Hb_002092_050--Hb_025161_040 Hb_065272_010--Hb_000029_240 Hb_065272_010--Hb_025161_040 Hb_001304_150--Hb_154146_010 Hb_001304_150--Hb_002092_050 Hb_001304_150--Hb_065272_010 Hb_154146_010--Hb_012090_010 Hb_154146_010--Hb_000331_600 Hb_001278_010 Hb_001278_010 Hb_154146_010--Hb_001278_010 Hb_154146_010--Hb_002092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.237325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0269262 0

CAGE analysis