Hb_001278_010

Information

Type -
Description -
Location Contig1278: 11762-12175
Sequence    

Annotation

kegg
ID rcu:RCOM_0577330
description hypothetical protein
nr
ID XP_002526291.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJX2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000355_020 0.0023744455 - - -
3 Hb_020712_020 0.0116156441 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
4 Hb_025526_110 0.0204467426 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_154146_010 0.0204954191 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
6 Hb_001304_150 0.0233398237 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_041188_010 0.0237804393 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
8 Hb_000313_240 0.0353288157 - - hypothetical protein RCOM_0377590 [Ricinus communis]
9 Hb_012090_010 0.0358581147 - - hypothetical protein RCOM_0904330 [Ricinus communis]
10 Hb_000331_600 0.0386784175 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
11 Hb_002092_050 0.041375327 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
12 Hb_065272_010 0.0456222449 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
13 Hb_000029_240 0.0507577978 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
14 Hb_025161_040 0.0573517454 - - kinase, putative [Ricinus communis]
15 Hb_002391_060 0.0687511782 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
16 Hb_051677_010 0.0695436555 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
17 Hb_031546_010 0.0720649382 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
18 Hb_002368_120 0.0726849661 - - hypothetical protein VITISV_033181 [Vitis vinifera]
19 Hb_007455_010 0.0731721201 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
20 Hb_092416_020 0.0831633396 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001278_010 Hb_001278_010 Hb_000355_020 Hb_000355_020 Hb_001278_010--Hb_000355_020 Hb_020712_020 Hb_020712_020 Hb_001278_010--Hb_020712_020 Hb_025526_110 Hb_025526_110 Hb_001278_010--Hb_025526_110 Hb_154146_010 Hb_154146_010 Hb_001278_010--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_001278_010--Hb_001304_150 Hb_041188_010 Hb_041188_010 Hb_001278_010--Hb_041188_010 Hb_000355_020--Hb_020712_020 Hb_000355_020--Hb_025526_110 Hb_000355_020--Hb_041188_010 Hb_000355_020--Hb_154146_010 Hb_000355_020--Hb_001304_150 Hb_020712_020--Hb_025526_110 Hb_020712_020--Hb_041188_010 Hb_020712_020--Hb_154146_010 Hb_020712_020--Hb_001304_150 Hb_025526_110--Hb_041188_010 Hb_025526_110--Hb_154146_010 Hb_025526_110--Hb_001304_150 Hb_154146_010--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_154146_010--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_154146_010--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_154146_010--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_154146_010--Hb_002092_050 Hb_001304_150--Hb_000313_240 Hb_001304_150--Hb_012090_010 Hb_001304_150--Hb_000331_600 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010 Hb_041188_010--Hb_154146_010 Hb_041188_010--Hb_001304_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.73688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.062442 0

CAGE analysis