Hb_025526_110

Information

Type -
Description -
Location Contig25526: 149553-151084
Sequence    

Annotation

kegg
ID tcc:TCM_031248
description S-locus lectin protein kinase family protein, putative
nr
ID XP_012075829.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061F779
description S-locus lectin protein kinase family protein, putative OS=Theobroma cacao GN=TCM_031248 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025526_110 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
2 Hb_041188_010 0.0033375073 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
3 Hb_020712_020 0.0088358479 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
4 Hb_000355_020 0.0180742288 - - -
5 Hb_001278_010 0.0204467426 - - conserved hypothetical protein [Ricinus communis]
6 Hb_154146_010 0.0409068874 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
7 Hb_001304_150 0.0437439653 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_031546_010 0.0518266208 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
9 Hb_000313_240 0.0556962549 - - hypothetical protein RCOM_0377590 [Ricinus communis]
10 Hb_012090_010 0.0562237272 - - hypothetical protein RCOM_0904330 [Ricinus communis]
11 Hb_000331_600 0.0590340158 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
12 Hb_002092_050 0.0617209166 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
13 Hb_092416_020 0.0630196651 - - protein with unknown function [Ricinus communis]
14 Hb_065272_010 0.0659512428 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
15 Hb_001946_420 0.0665302613 - - protein with unknown function [Ricinus communis]
16 Hb_000029_240 0.0710654271 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
17 Hb_025161_040 0.0776299498 - - kinase, putative [Ricinus communis]
18 Hb_002368_120 0.0808991914 - - hypothetical protein VITISV_033181 [Vitis vinifera]
19 Hb_000056_140 0.0824071459 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
20 Hb_001688_040 0.0856812122 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025526_110 Hb_025526_110 Hb_041188_010 Hb_041188_010 Hb_025526_110--Hb_041188_010 Hb_020712_020 Hb_020712_020 Hb_025526_110--Hb_020712_020 Hb_000355_020 Hb_000355_020 Hb_025526_110--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_025526_110--Hb_001278_010 Hb_154146_010 Hb_154146_010 Hb_025526_110--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_025526_110--Hb_001304_150 Hb_041188_010--Hb_020712_020 Hb_041188_010--Hb_000355_020 Hb_041188_010--Hb_001278_010 Hb_041188_010--Hb_154146_010 Hb_041188_010--Hb_001304_150 Hb_020712_020--Hb_000355_020 Hb_020712_020--Hb_001278_010 Hb_020712_020--Hb_154146_010 Hb_020712_020--Hb_001304_150 Hb_000355_020--Hb_001278_010 Hb_000355_020--Hb_154146_010 Hb_000355_020--Hb_001304_150 Hb_001278_010--Hb_154146_010 Hb_001278_010--Hb_001304_150 Hb_154146_010--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_154146_010--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_154146_010--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_154146_010--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_154146_010--Hb_002092_050 Hb_001304_150--Hb_000313_240 Hb_001304_150--Hb_012090_010 Hb_001304_150--Hb_000331_600 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.16759 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0117826 0

CAGE analysis