Hb_041063_010

Information

Type -
Description -
Location Contig41063: 2-472
Sequence    

Annotation

kegg
ID rcu:RCOM_1331600
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_002521789.1
description Disease resistance protein RFL1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S720
description Disease resistance protein RFL1, putative OS=Ricinus communis GN=RCOM_1331600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041063_010 0.0 - - Disease resistance protein RFL1, putative [Ricinus communis]
2 Hb_000032_330 0.0819847801 - - conserved hypothetical protein [Ricinus communis]
3 Hb_060236_010 0.0995001616 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
4 Hb_000098_210 0.1022715672 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
5 Hb_004241_050 0.1078333983 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
6 Hb_002054_090 0.1078358378 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
7 Hb_131417_010 0.1108249897 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
8 Hb_000297_220 0.1123172505 - - SAUR family protein [Theobroma cacao]
9 Hb_002413_030 0.1186923374 - - sulfate transporter, putative [Ricinus communis]
10 Hb_082733_010 0.1200576223 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
11 Hb_000059_110 0.124065106 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_007007_020 0.1280621852 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004631_030 0.1334329558 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
14 Hb_006326_020 0.1391399397 - - -
15 Hb_000521_350 0.1413200607 - - unnamed protein product [Vitis vinifera]
16 Hb_148817_010 0.1433528753 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
17 Hb_095532_010 0.1497155866 - - BnaC05g27570D [Brassica napus]
18 Hb_000429_030 0.151623626 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_004875_040 0.1529550705 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
20 Hb_131029_010 0.1547812722 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_041063_010 Hb_041063_010 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_060236_010 Hb_060236_010 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_004241_050 Hb_004241_050 Hb_041063_010--Hb_004241_050 Hb_002054_090 Hb_002054_090 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_000032_330--Hb_000098_210 Hb_148817_010 Hb_148817_010 Hb_000032_330--Hb_148817_010 Hb_095532_010 Hb_095532_010 Hb_000032_330--Hb_095532_010 Hb_004875_040 Hb_004875_040 Hb_000032_330--Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_000032_330--Hb_020805_110 Hb_082733_010 Hb_082733_010 Hb_060236_010--Hb_082733_010 Hb_060236_010--Hb_004241_050 Hb_000563_620 Hb_000563_620 Hb_060236_010--Hb_000563_620 Hb_007007_020 Hb_007007_020 Hb_060236_010--Hb_007007_020 Hb_060236_010--Hb_002054_090 Hb_000098_210--Hb_004875_040 Hb_000098_210--Hb_148817_010 Hb_003171_070 Hb_003171_070 Hb_000098_210--Hb_003171_070 Hb_003371_040 Hb_003371_040 Hb_000098_210--Hb_003371_040 Hb_000059_110 Hb_000059_110 Hb_004241_050--Hb_000059_110 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_004241_050--Hb_082733_010 Hb_004241_050--Hb_000563_620 Hb_004631_030 Hb_004631_030 Hb_002054_090--Hb_004631_030 Hb_000297_220 Hb_000297_220 Hb_002054_090--Hb_000297_220 Hb_002054_090--Hb_004241_050 Hb_002054_090--Hb_000059_110 Hb_131417_010--Hb_000297_220 Hb_131417_010--Hb_002054_090 Hb_131417_010--Hb_000032_330 Hb_131417_010--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_131417_010--Hb_012516_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240564 0.0522318 1.79783 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.87719 0

CAGE analysis