Hb_095532_010

Information

Type -
Description -
Location Contig95532: 195-770
Sequence    

Annotation

kegg
ID dosa:Os01t0153050-00
description Os01g0153050; Hypothetical protein.
nr
ID CDX73349.1
description BnaC05g27570D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078CAX2
description BnaC05g27570D protein OS=Brassica napus GN=BnaC05g27570D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095532_010 0.0 - - BnaC05g27570D [Brassica napus]
2 Hb_148817_010 0.0824428043 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
3 Hb_003469_030 0.0932323598 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
4 Hb_000032_330 0.1045052183 - - conserved hypothetical protein [Ricinus communis]
5 Hb_161981_010 0.1092085372 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
6 Hb_000521_350 0.1166651306 - - unnamed protein product [Vitis vinifera]
7 Hb_000670_080 0.1298590766 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004875_040 0.1300614238 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
9 Hb_086122_030 0.1322944096 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
10 Hb_020805_110 0.1381078543 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_046191_010 0.1399001734 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_014115_010 0.1409441799 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000098_210 0.1413066208 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
14 Hb_000081_030 0.146591803 - - BnaC09g05810D [Brassica napus]
15 Hb_131029_010 0.1478794088 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_041063_010 0.1497155866 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_001522_050 0.1526222832 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
18 Hb_001856_150 0.1533084453 - - -
19 Hb_000676_380 0.154616485 - - cytochrome P450 family protein [Populus trichocarpa]
20 Hb_000306_050 0.156232792 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_095532_010 Hb_095532_010 Hb_148817_010 Hb_148817_010 Hb_095532_010--Hb_148817_010 Hb_003469_030 Hb_003469_030 Hb_095532_010--Hb_003469_030 Hb_000032_330 Hb_000032_330 Hb_095532_010--Hb_000032_330 Hb_161981_010 Hb_161981_010 Hb_095532_010--Hb_161981_010 Hb_000521_350 Hb_000521_350 Hb_095532_010--Hb_000521_350 Hb_000670_080 Hb_000670_080 Hb_095532_010--Hb_000670_080 Hb_148817_010--Hb_000521_350 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_004875_040 Hb_004875_040 Hb_148817_010--Hb_004875_040 Hb_148817_010--Hb_000032_330 Hb_006314_020 Hb_006314_020 Hb_148817_010--Hb_006314_020 Hb_046191_010 Hb_046191_010 Hb_003469_030--Hb_046191_010 Hb_010571_010 Hb_010571_010 Hb_003469_030--Hb_010571_010 Hb_002499_020 Hb_002499_020 Hb_003469_030--Hb_002499_020 Hb_014115_010 Hb_014115_010 Hb_003469_030--Hb_014115_010 Hb_001522_050 Hb_001522_050 Hb_003469_030--Hb_001522_050 Hb_000098_210 Hb_000098_210 Hb_000032_330--Hb_000098_210 Hb_041063_010 Hb_041063_010 Hb_000032_330--Hb_041063_010 Hb_000032_330--Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_000032_330--Hb_020805_110 Hb_086122_030 Hb_086122_030 Hb_161981_010--Hb_086122_030 Hb_060272_010 Hb_060272_010 Hb_161981_010--Hb_060272_010 Hb_161981_010--Hb_000521_350 Hb_000155_270 Hb_000155_270 Hb_161981_010--Hb_000155_270 Hb_006268_010 Hb_006268_010 Hb_161981_010--Hb_006268_010 Hb_161981_010--Hb_148817_010 Hb_000521_350--Hb_086122_030 Hb_000521_350--Hb_060272_010 Hb_000059_110 Hb_000059_110 Hb_000521_350--Hb_000059_110 Hb_001821_030 Hb_001821_030 Hb_000521_350--Hb_001821_030 Hb_131029_010 Hb_131029_010 Hb_000670_080--Hb_131029_010 Hb_000670_080--Hb_001522_050 Hb_006326_020 Hb_006326_020 Hb_000670_080--Hb_006326_020 Hb_000670_080--Hb_000032_330 Hb_000670_080--Hb_004875_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0398743 0 0.201346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.176348 0

CAGE analysis