Hb_004875_040

Information

Type -
Description -
Location Contig4875: 64729-66462
Sequence    

Annotation

kegg
ID rcu:RCOM_1687010
description hypothetical protein
nr
ID XP_012086885.1
description PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20582 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004875_040 0.0 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
2 Hb_020805_110 0.0912600032 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
3 Hb_148817_010 0.0934316582 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
4 Hb_001856_150 0.0942594163 - - -
5 Hb_000098_210 0.096870345 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
6 Hb_000676_380 0.1036415361 - - cytochrome P450 family protein [Populus trichocarpa]
7 Hb_006314_020 0.1071741721 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
8 Hb_000032_330 0.1071911422 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003171_070 0.1133673697 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
10 Hb_003090_230 0.1201148302 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001821_030 0.1234513944 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
12 Hb_001775_130 0.1264163234 - - Prephenate dehydratase [Hevea brasiliensis]
13 Hb_000081_030 0.1281533053 - - BnaC09g05810D [Brassica napus]
14 Hb_095532_010 0.1300614238 - - BnaC05g27570D [Brassica napus]
15 Hb_003371_040 0.1310987224 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
16 Hb_002876_190 0.1327509208 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
17 Hb_000230_160 0.1332408158 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
18 Hb_009711_040 0.1382189022 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
19 Hb_000429_030 0.1415406809 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_001522_050 0.1440254691 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_004875_040 Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_148817_010 Hb_148817_010 Hb_004875_040--Hb_148817_010 Hb_001856_150 Hb_001856_150 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_000676_380 Hb_000676_380 Hb_004875_040--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_004875_040--Hb_006314_020 Hb_020805_110--Hb_000676_380 Hb_009711_040 Hb_009711_040 Hb_020805_110--Hb_009711_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_020805_110--Hb_003090_230 Hb_020805_110--Hb_001856_150 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_000521_350 Hb_000521_350 Hb_148817_010--Hb_000521_350 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_148817_010--Hb_006314_020 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_001856_150--Hb_000081_030 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_000098_210--Hb_000032_330 Hb_041063_010 Hb_041063_010 Hb_000098_210--Hb_041063_010 Hb_000098_210--Hb_148817_010 Hb_000098_210--Hb_003171_070 Hb_003371_040 Hb_003371_040 Hb_000098_210--Hb_003371_040 Hb_000676_380--Hb_003090_230 Hb_000676_380--Hb_003171_070 Hb_000676_380--Hb_001856_150 Hb_000676_380--Hb_009711_040 Hb_006314_020--Hb_003371_040 Hb_006314_020--Hb_000230_160 Hb_006314_020--Hb_003171_070 Hb_006314_020--Hb_000081_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0144471 0.33506 0.0441711 1.9422 0.0108954 0.0203854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.65155 0.0438191

CAGE analysis