Hb_000306_050

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig306: 91436-94522
Sequence    

Annotation

kegg
ID rcu:RCOM_0434530
description protein with unknown function
nr
ID XP_002533942.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0434530 PE=4 SV=1
Gene Ontology
ID GO:0005622
description platz transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000306_050 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_014115_010 0.087328897 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_020805_110 0.0924565487 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_001596_030 0.1027520986 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
5 Hb_009711_040 0.110882394 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
6 Hb_000836_250 0.1152852208 - - hypothetical protein VITISV_022299 [Vitis vinifera]
7 Hb_000297_220 0.1165866922 - - SAUR family protein [Theobroma cacao]
8 Hb_000417_350 0.1169445116 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001856_150 0.1279180571 - - -
10 Hb_006314_020 0.1283733049 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
11 Hb_046191_010 0.1291667987 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_148817_010 0.1340462461 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
13 Hb_000032_330 0.1375946415 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003171_070 0.1382507264 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
15 Hb_000230_160 0.1383489919 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
16 Hb_000081_030 0.1435486669 - - BnaC09g05810D [Brassica napus]
17 Hb_000676_380 0.1438544156 - - cytochrome P450 family protein [Populus trichocarpa]
18 Hb_000521_350 0.1449868561 - - unnamed protein product [Vitis vinifera]
19 Hb_012516_030 0.1480595899 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
20 Hb_014865_010 0.1490705189 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]

Gene co-expression network

sample Hb_000306_050 Hb_000306_050 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_020805_110 Hb_020805_110 Hb_000306_050--Hb_020805_110 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_009711_040 Hb_009711_040 Hb_000306_050--Hb_009711_040 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250 Hb_000297_220 Hb_000297_220 Hb_000306_050--Hb_000297_220 Hb_046191_010 Hb_046191_010 Hb_014115_010--Hb_046191_010 Hb_005056_030 Hb_005056_030 Hb_014115_010--Hb_005056_030 Hb_000081_030 Hb_000081_030 Hb_014115_010--Hb_000081_030 Hb_000761_030 Hb_000761_030 Hb_014115_010--Hb_000761_030 Hb_006120_010 Hb_006120_010 Hb_014115_010--Hb_006120_010 Hb_000676_380 Hb_000676_380 Hb_020805_110--Hb_000676_380 Hb_020805_110--Hb_009711_040 Hb_004875_040 Hb_004875_040 Hb_020805_110--Hb_004875_040 Hb_003090_230 Hb_003090_230 Hb_020805_110--Hb_003090_230 Hb_001856_150 Hb_001856_150 Hb_020805_110--Hb_001856_150 Hb_081282_010 Hb_081282_010 Hb_001596_030--Hb_081282_010 Hb_021418_010 Hb_021418_010 Hb_001596_030--Hb_021418_010 Hb_001242_020 Hb_001242_020 Hb_001596_030--Hb_001242_020 Hb_000540_030 Hb_000540_030 Hb_001596_030--Hb_000540_030 Hb_001596_030--Hb_020805_110 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_009711_040--Hb_000676_380 Hb_003171_070 Hb_003171_070 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_003090_230 Hb_000836_250--Hb_020805_110 Hb_000836_250--Hb_000297_220 Hb_129637_010 Hb_129637_010 Hb_000836_250--Hb_129637_010 Hb_000836_250--Hb_000417_350 Hb_000836_250--Hb_009711_040 Hb_004631_030 Hb_004631_030 Hb_000297_220--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000297_220--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_000297_220--Hb_000956_060 Hb_041063_010 Hb_041063_010 Hb_000297_220--Hb_041063_010 Hb_002054_090 Hb_002054_090 Hb_000297_220--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.176322 0.0661026 0.635469 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.72746 0

CAGE analysis