Hb_000836_250

Information

Type -
Description -
Location Contig836: 193881-194954
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24200g
description hypothetical protein
nr
ID CAN73978.1
description hypothetical protein VITISV_022299 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AZZ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022299 PE=4 SV=1
Gene Ontology
ID GO:0016758
description udp-rhamnose:rhamnosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_250 0.0 - - hypothetical protein VITISV_022299 [Vitis vinifera]
2 Hb_020805_110 0.1147882051 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
3 Hb_000306_050 0.1152852208 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_000297_220 0.1227014351 - - SAUR family protein [Theobroma cacao]
5 Hb_129637_010 0.1437005394 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
6 Hb_000417_350 0.145090204 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009711_040 0.1479056188 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
8 Hb_012516_030 0.1489597762 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
9 Hb_000956_060 0.1530877236 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
10 Hb_000032_330 0.1582320098 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_130 0.1582615924 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
12 Hb_004875_040 0.1603400906 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
13 Hb_006314_020 0.1620465798 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
14 Hb_001821_030 0.1652586214 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
15 Hb_004631_030 0.1652726965 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
16 Hb_003171_070 0.1655741373 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
17 Hb_014115_010 0.1657818266 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000429_030 0.1658735265 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_001522_050 0.1664290811 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
20 Hb_001596_030 0.1674604044 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]

Gene co-expression network

sample Hb_000836_250 Hb_000836_250 Hb_020805_110 Hb_020805_110 Hb_000836_250--Hb_020805_110 Hb_000306_050 Hb_000306_050 Hb_000836_250--Hb_000306_050 Hb_000297_220 Hb_000297_220 Hb_000836_250--Hb_000297_220 Hb_129637_010 Hb_129637_010 Hb_000836_250--Hb_129637_010 Hb_000417_350 Hb_000417_350 Hb_000836_250--Hb_000417_350 Hb_009711_040 Hb_009711_040 Hb_000836_250--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_020805_110--Hb_000676_380 Hb_020805_110--Hb_009711_040 Hb_004875_040 Hb_004875_040 Hb_020805_110--Hb_004875_040 Hb_020805_110--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_020805_110--Hb_003090_230 Hb_001856_150 Hb_001856_150 Hb_020805_110--Hb_001856_150 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_000306_050--Hb_009711_040 Hb_000306_050--Hb_000297_220 Hb_004631_030 Hb_004631_030 Hb_000297_220--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000297_220--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_000297_220--Hb_000956_060 Hb_041063_010 Hb_041063_010 Hb_000297_220--Hb_041063_010 Hb_002054_090 Hb_002054_090 Hb_000297_220--Hb_002054_090 Hb_129637_010--Hb_000417_350 Hb_001053_110 Hb_001053_110 Hb_129637_010--Hb_001053_110 Hb_129637_010--Hb_009711_040 Hb_001369_620 Hb_001369_620 Hb_129637_010--Hb_001369_620 Hb_005333_120 Hb_005333_120 Hb_129637_010--Hb_005333_120 Hb_118707_020 Hb_118707_020 Hb_129637_010--Hb_118707_020 Hb_000417_350--Hb_009711_040 Hb_000417_350--Hb_001053_110 Hb_000417_350--Hb_005333_120 Hb_000417_350--Hb_000306_050 Hb_003171_070 Hb_003171_070 Hb_000417_350--Hb_003171_070 Hb_009711_040--Hb_000676_380 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_003090_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030784 0.155641 0.0710134 0.632344 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.564809 0

CAGE analysis