Hb_000956_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig956: 68934-70872
Sequence    

Annotation

kegg
ID rcu:RCOM_1589780
description hypothetical protein
nr
ID XP_002510191.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FXA3
description Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2
trembl
ID B9R798
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1589780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh95-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_060 0.0 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
2 Hb_000975_130 0.057788886 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
3 Hb_000297_220 0.0778688286 - - SAUR family protein [Theobroma cacao]
4 Hb_004631_030 0.0796671914 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
5 Hb_012516_030 0.0852382852 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
6 Hb_003811_050 0.0980826778 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
7 Hb_000676_130 0.1019745957 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
8 Hb_000566_170 0.1192505927 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
9 Hb_005672_030 0.1223810664 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
10 Hb_000510_210 0.1303612874 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
11 Hb_002054_090 0.1424409208 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
12 Hb_011206_050 0.1434009426 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
13 Hb_002580_020 0.1441828715 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
14 Hb_131417_010 0.1495033111 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
15 Hb_000429_030 0.1498197127 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_081191_010 0.1524319501 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
17 Hb_000836_250 0.1530877236 - - hypothetical protein VITISV_022299 [Vitis vinifera]
18 Hb_000853_010 0.153504541 - - Pectinesterase-3 precursor, putative [Ricinus communis]
19 Hb_014865_010 0.154905236 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
20 Hb_005144_100 0.1583142436 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000956_060 Hb_000956_060 Hb_000975_130 Hb_000975_130 Hb_000956_060--Hb_000975_130 Hb_000297_220 Hb_000297_220 Hb_000956_060--Hb_000297_220 Hb_004631_030 Hb_004631_030 Hb_000956_060--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000956_060--Hb_012516_030 Hb_003811_050 Hb_003811_050 Hb_000956_060--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_000956_060--Hb_000676_130 Hb_000975_130--Hb_003811_050 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000853_010 Hb_000853_010 Hb_000975_130--Hb_000853_010 Hb_000975_130--Hb_000676_130 Hb_000975_130--Hb_004631_030 Hb_000297_220--Hb_004631_030 Hb_000297_220--Hb_012516_030 Hb_041063_010 Hb_041063_010 Hb_000297_220--Hb_041063_010 Hb_002054_090 Hb_002054_090 Hb_000297_220--Hb_002054_090 Hb_000306_050 Hb_000306_050 Hb_000297_220--Hb_000306_050 Hb_004631_030--Hb_012516_030 Hb_000566_170 Hb_000566_170 Hb_004631_030--Hb_000566_170 Hb_000510_210 Hb_000510_210 Hb_004631_030--Hb_000510_210 Hb_004631_030--Hb_002054_090 Hb_012516_030--Hb_000566_170 Hb_012516_030--Hb_000510_210 Hb_012516_030--Hb_000975_130 Hb_000007_070 Hb_000007_070 Hb_003811_050--Hb_000007_070 Hb_081191_010 Hb_081191_010 Hb_003811_050--Hb_081191_010 Hb_002580_020 Hb_002580_020 Hb_003811_050--Hb_002580_020 Hb_003811_050--Hb_000676_130 Hb_014865_010 Hb_014865_010 Hb_000676_130--Hb_014865_010 Hb_000676_130--Hb_002580_020 Hb_000676_130--Hb_005672_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0246716 0.0221609 0.109332 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0646551 0

CAGE analysis