Hb_002580_020

Information

Type -
Description -
Location Contig2580: 38333-38638
Sequence    

Annotation

kegg
ID pop:POPTR_0125s00200g
description hypothetical protein
nr
ID KDP27272.1
description hypothetical protein JCGZ_19971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_K05.ab1: 38187-38676 , 045_J06.ab1: 38228-38674

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002580_020 0.0 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
2 Hb_009615_030 0.0771861313 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_081191_010 0.0873822684 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
4 Hb_003811_050 0.0979604044 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
5 Hb_000676_130 0.1078991491 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
6 Hb_006834_010 0.1117506328 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000853_010 0.1185599361 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_004984_020 0.1274047319 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
9 Hb_000975_130 0.1309587471 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
10 Hb_000429_030 0.1326209911 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_003177_100 0.1339401365 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
12 Hb_000028_620 0.1357047755 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000749_160 0.1379190703 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_005672_030 0.14063094 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
15 Hb_014865_010 0.1415385291 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
16 Hb_000956_060 0.1441828715 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
17 Hb_000552_060 0.1472207941 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
18 Hb_000007_070 0.1486190439 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
19 Hb_001416_170 0.1565883683 - - kinase, putative [Ricinus communis]
20 Hb_002601_040 0.1584756164 - - hypothetical protein JCGZ_06197 [Jatropha curcas]

Gene co-expression network

sample Hb_002580_020 Hb_002580_020 Hb_009615_030 Hb_009615_030 Hb_002580_020--Hb_009615_030 Hb_081191_010 Hb_081191_010 Hb_002580_020--Hb_081191_010 Hb_003811_050 Hb_003811_050 Hb_002580_020--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_002580_020--Hb_000676_130 Hb_006834_010 Hb_006834_010 Hb_002580_020--Hb_006834_010 Hb_000853_010 Hb_000853_010 Hb_002580_020--Hb_000853_010 Hb_009615_030--Hb_081191_010 Hb_003177_100 Hb_003177_100 Hb_009615_030--Hb_003177_100 Hb_000749_160 Hb_000749_160 Hb_009615_030--Hb_000749_160 Hb_002097_180 Hb_002097_180 Hb_009615_030--Hb_002097_180 Hb_000429_030 Hb_000429_030 Hb_009615_030--Hb_000429_030 Hb_081191_010--Hb_003811_050 Hb_081191_010--Hb_000429_030 Hb_081191_010--Hb_003177_100 Hb_002413_030 Hb_002413_030 Hb_081191_010--Hb_002413_030 Hb_000975_130 Hb_000975_130 Hb_003811_050--Hb_000975_130 Hb_000007_070 Hb_000007_070 Hb_003811_050--Hb_000007_070 Hb_000956_060 Hb_000956_060 Hb_003811_050--Hb_000956_060 Hb_003811_050--Hb_000676_130 Hb_014865_010 Hb_014865_010 Hb_000676_130--Hb_014865_010 Hb_000676_130--Hb_000956_060 Hb_000676_130--Hb_000975_130 Hb_005672_030 Hb_005672_030 Hb_000676_130--Hb_005672_030 Hb_006834_010--Hb_000853_010 Hb_001416_170 Hb_001416_170 Hb_006834_010--Hb_001416_170 Hb_004984_020 Hb_004984_020 Hb_006834_010--Hb_004984_020 Hb_055440_010 Hb_055440_010 Hb_006834_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_006834_010--Hb_001002_090 Hb_000853_010--Hb_001416_170 Hb_000853_010--Hb_003811_050 Hb_000853_010--Hb_000975_130 Hb_000853_010--Hb_004984_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.748488 29.1302 92.9813 343.334 1.33379 0.707562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 208.301 7.0084

CAGE analysis