Hb_055440_010

Information

Type -
Description -
Location Contig55440: 247-2116
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48445: 1188-2191
cDNA
(Sanger)
(ID:Location)		 034_K07.ab1: 1199-2191 , 043_C11.ab1: 1197-2191 , 044_P06.ab1: 1278-2191 , 045_C06.ab1: 1260-2191 , 047_I20.ab1: 1188-2191

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055440_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001002_090 0.0739593003 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
3 Hb_072997_010 0.1068469903 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
4 Hb_004984_020 0.1175253502 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
5 Hb_006834_010 0.1223517708 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004096_010 0.1224574326 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
7 Hb_000979_080 0.1245582227 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
8 Hb_001776_070 0.1263769949 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
9 Hb_000187_110 0.1282161733 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
10 Hb_009070_030 0.1311307814 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
11 Hb_009767_030 0.1326049378 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
12 Hb_010598_010 0.1339817644 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
13 Hb_001416_170 0.1394883624 - - kinase, putative [Ricinus communis]
14 Hb_021888_010 0.1432614368 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
15 Hb_000161_230 0.1478657794 - - lactoylglutathione lyase, putative [Ricinus communis]
16 Hb_010164_020 0.1491758333 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
17 Hb_001158_110 0.1513077072 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
18 Hb_005144_080 0.1540419101 - - Serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000696_030 0.1559857566 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
20 Hb_000111_120 0.1574195425 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_055440_010 Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_055440_010--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_001002_090--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_001002_090--Hb_000187_110 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_072997_010--Hb_004096_010 Hb_010598_010 Hb_010598_010 Hb_072997_010--Hb_010598_010 Hb_072997_010--Hb_009767_030 Hb_001288_020 Hb_001288_020 Hb_072997_010--Hb_001288_020 Hb_004984_020--Hb_006834_010 Hb_000853_010 Hb_000853_010 Hb_004984_020--Hb_000853_010 Hb_002580_020 Hb_002580_020 Hb_004984_020--Hb_002580_020 Hb_005144_080 Hb_005144_080 Hb_004984_020--Hb_005144_080 Hb_001416_170 Hb_001416_170 Hb_004984_020--Hb_001416_170 Hb_006834_010--Hb_000853_010 Hb_006834_010--Hb_001416_170 Hb_006834_010--Hb_002580_020 Hb_006834_010--Hb_001002_090 Hb_004096_010--Hb_010598_010 Hb_001862_160 Hb_001862_160 Hb_004096_010--Hb_001862_160 Hb_001269_120 Hb_001269_120 Hb_004096_010--Hb_001269_120 Hb_004096_010--Hb_009767_030 Hb_000979_080--Hb_000187_110 Hb_003768_100 Hb_003768_100 Hb_000979_080--Hb_003768_100 Hb_003226_050 Hb_003226_050 Hb_000979_080--Hb_003226_050 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.339569 6.37492 23.9236 25.0113 0.462561 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0575559 29.6657 1.02462

CAGE analysis