Hb_001269_120

Information

Type transcription factor
Description TF Family: ERF
Location Contig1269: 163099-163921
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17830g
description POPTRDRAFT_800158; hypothetical protein
nr
ID XP_012067539.1
description PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
swissprot
ID Q94AW5
description Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
trembl
ID A0A067LD25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27017 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf003-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08157: 163173-164010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_120 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
2 Hb_004096_010 0.122228076 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
3 Hb_001862_160 0.1249124468 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
4 Hb_000979_070 0.150150255 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
5 Hb_055440_010 0.1676487516 - - protein binding protein, putative [Ricinus communis]
6 Hb_072997_010 0.1738457994 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
7 Hb_009535_010 0.1750805758 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
8 Hb_001416_170 0.1766409398 - - kinase, putative [Ricinus communis]
9 Hb_001005_170 0.1845229358 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_185666_010 0.18609179 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
11 Hb_009767_030 0.1912506481 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
12 Hb_000094_230 0.1915018781 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
13 Hb_013358_030 0.1920328352 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
14 Hb_151094_020 0.1945237462 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
15 Hb_006834_010 0.1952453971 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004984_020 0.195339893 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
17 Hb_010598_010 0.1965717879 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
18 Hb_008143_050 0.1969403025 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
19 Hb_001006_050 0.1981414369 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
20 Hb_001158_110 0.1984140139 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_120 Hb_001269_120 Hb_004096_010 Hb_004096_010 Hb_001269_120--Hb_004096_010 Hb_001862_160 Hb_001862_160 Hb_001269_120--Hb_001862_160 Hb_000979_070 Hb_000979_070 Hb_001269_120--Hb_000979_070 Hb_055440_010 Hb_055440_010 Hb_001269_120--Hb_055440_010 Hb_072997_010 Hb_072997_010 Hb_001269_120--Hb_072997_010 Hb_009535_010 Hb_009535_010 Hb_001269_120--Hb_009535_010 Hb_010598_010 Hb_010598_010 Hb_004096_010--Hb_010598_010 Hb_004096_010--Hb_072997_010 Hb_004096_010--Hb_001862_160 Hb_004096_010--Hb_055440_010 Hb_009767_030 Hb_009767_030 Hb_004096_010--Hb_009767_030 Hb_001862_160--Hb_000979_070 Hb_151094_020 Hb_151094_020 Hb_001862_160--Hb_151094_020 Hb_000438_030 Hb_000438_030 Hb_001862_160--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_001862_160--Hb_147060_010 Hb_000094_230 Hb_000094_230 Hb_000979_070--Hb_000094_230 Hb_185666_010 Hb_185666_010 Hb_000979_070--Hb_185666_010 Hb_000535_040 Hb_000535_040 Hb_000979_070--Hb_000535_040 Hb_020025_030 Hb_020025_030 Hb_000979_070--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000979_070--Hb_000140_200 Hb_001002_090 Hb_001002_090 Hb_055440_010--Hb_001002_090 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_072997_010--Hb_001002_090 Hb_072997_010--Hb_010598_010 Hb_072997_010--Hb_009767_030 Hb_001288_020 Hb_001288_020 Hb_072997_010--Hb_001288_020 Hb_000490_040 Hb_000490_040 Hb_009535_010--Hb_000490_040 Hb_000272_010 Hb_000272_010 Hb_009535_010--Hb_000272_010 Hb_006711_040 Hb_006711_040 Hb_009535_010--Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_009535_010--Hb_000343_220 Hb_009535_010--Hb_000535_040 Hb_001252_050 Hb_001252_050 Hb_009535_010--Hb_001252_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203422 0.348799 2.75313 2.35064 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.88615 0

CAGE analysis