Hb_000535_040

Information

Type -
Description -
Location Contig535: 43196-45968
Sequence    

Annotation

kegg
ID rcu:RCOM_0864030
description hypothetical protein
nr
ID XP_012082185.1
description PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19401 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47525: 43336-45572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000535_040 0.0 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
2 Hb_000094_230 0.08001822 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
3 Hb_000272_010 0.101305502 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
4 Hb_008143_050 0.1034003003 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
5 Hb_001782_100 0.1137140794 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_001263_030 0.1140918519 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
7 Hb_000979_070 0.1170084415 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
8 Hb_001252_050 0.1193758648 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
9 Hb_000431_100 0.1222452541 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
10 Hb_000490_040 0.1230131647 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
11 Hb_000260_670 0.123856418 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
12 Hb_000417_140 0.1243336522 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
13 Hb_006711_040 0.1267131845 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
14 Hb_003360_010 0.1273246822 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
15 Hb_000343_220 0.1298911231 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
16 Hb_020301_020 0.1299072578 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_020025_030 0.1325643816 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
18 Hb_002276_250 0.1333570784 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
19 Hb_010672_010 0.1367987509 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
20 Hb_000140_200 0.1390741931 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]

Gene co-expression network

sample Hb_000535_040 Hb_000535_040 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_000272_010 Hb_000272_010 Hb_000535_040--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001782_100 Hb_001782_100 Hb_000535_040--Hb_001782_100 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070 Hb_000094_230--Hb_000979_070 Hb_020025_030 Hb_020025_030 Hb_000094_230--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000094_230--Hb_000140_200 Hb_000094_230--Hb_001263_030 Hb_004531_060 Hb_004531_060 Hb_000094_230--Hb_004531_060 Hb_001366_380 Hb_001366_380 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000343_220 Hb_000343_220 Hb_000272_010--Hb_000343_220 Hb_006711_040 Hb_006711_040 Hb_000272_010--Hb_006711_040 Hb_001252_050 Hb_001252_050 Hb_008143_050--Hb_001252_050 Hb_005306_030 Hb_005306_030 Hb_008143_050--Hb_005306_030 Hb_000417_140 Hb_000417_140 Hb_008143_050--Hb_000417_140 Hb_008143_050--Hb_000272_010 Hb_008143_050--Hb_000260_670 Hb_006351_030 Hb_006351_030 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_024682_030 Hb_024682_030 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000030_080 Hb_000030_080 Hb_001263_030--Hb_000030_080 Hb_001263_030--Hb_004531_060 Hb_001263_030--Hb_020025_030 Hb_001263_030--Hb_000140_200 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_001454_270 Hb_001454_270 Hb_001263_030--Hb_001454_270 Hb_185666_010 Hb_185666_010 Hb_000979_070--Hb_185666_010 Hb_001862_160 Hb_001862_160 Hb_000979_070--Hb_001862_160 Hb_000979_070--Hb_020025_030 Hb_000979_070--Hb_000140_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.021585 0.235905 4.2972 3.75265 0.0335876 0.0180749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0790905 0 0 2.09267 0.386727

CAGE analysis