Hb_005306_030

Information

Type -
Description -
Location Contig5306: 33981-36718
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04240g
description POPTRDRAFT_756641; calmodulin-binding family protein
nr
ID XP_012068952.1
description PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KX46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24750 PE=4 SV=1
Gene Ontology
ID GO:0016301
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47355: 34370-35069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_030 0.0 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
2 Hb_001649_050 0.0849002691 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
3 Hb_001366_380 0.0960160764 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
4 Hb_011849_030 0.0970339127 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008143_050 0.1059083025 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
6 Hb_000103_460 0.1061201409 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
7 Hb_004607_020 0.1068332369 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_002874_010 0.1089690553 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
9 Hb_080147_070 0.109070764 - - Rop5 [Hevea brasiliensis]
10 Hb_000260_670 0.1093347057 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
11 Hb_001159_220 0.1096717356 - - ESC, putative [Ricinus communis]
12 Hb_001076_010 0.1110292011 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
13 Hb_000272_010 0.1158727244 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
14 Hb_006316_090 0.1176473156 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000592_100 0.126628691 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_004531_060 0.1281768474 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
17 Hb_000417_140 0.1298173765 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
18 Hb_004316_080 0.1306480993 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
19 Hb_002700_030 0.1325113974 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
20 Hb_001369_550 0.1330870952 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005306_030 Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_005306_030--Hb_001649_050 Hb_001366_380 Hb_001366_380 Hb_005306_030--Hb_001366_380 Hb_011849_030 Hb_011849_030 Hb_005306_030--Hb_011849_030 Hb_008143_050 Hb_008143_050 Hb_005306_030--Hb_008143_050 Hb_000103_460 Hb_000103_460 Hb_005306_030--Hb_000103_460 Hb_004607_020 Hb_004607_020 Hb_005306_030--Hb_004607_020 Hb_001649_050--Hb_011849_030 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_001649_050--Hb_004316_080 Hb_000260_670 Hb_000260_670 Hb_001649_050--Hb_000260_670 Hb_000272_010 Hb_000272_010 Hb_001366_380--Hb_000272_010 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_001159_220 Hb_001159_220 Hb_011849_030--Hb_001159_220 Hb_011849_030--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_001252_050 Hb_001252_050 Hb_008143_050--Hb_001252_050 Hb_000535_040 Hb_000535_040 Hb_008143_050--Hb_000535_040 Hb_000417_140 Hb_000417_140 Hb_008143_050--Hb_000417_140 Hb_008143_050--Hb_000272_010 Hb_008143_050--Hb_000260_670 Hb_000103_460--Hb_006316_090 Hb_000358_010 Hb_000358_010 Hb_000103_460--Hb_000358_010 Hb_000103_460--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_000103_460--Hb_001369_550 Hb_002874_010 Hb_002874_010 Hb_000103_460--Hb_002874_010 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0221838 0.797763 8.16138 3.71787 0.010385 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.4188 0.459978

CAGE analysis