Hb_001649_050

Information

Type -
Description -
Location Contig1649: 32420-36195
Sequence    

Annotation

kegg
ID tcc:TCM_016906
description Shaggy-like kinase 13 isoform 1
nr
ID XP_007031504.1
description Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
swissprot
ID Q8VZD5
description Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1
trembl
ID A0A061EBX2
description Shaggy-like kinase 13 isoform 1 OS=Theobroma cacao GN=TCM_016906 PE=4 SV=1
Gene Ontology
ID GO:0005634
description shaggy-related protein kinase epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15157: 32117-36192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001649_050 0.0 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
2 Hb_005306_030 0.0849002691 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
3 Hb_011849_030 0.0965008464 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004607_020 0.1012619919 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
5 Hb_001366_380 0.1038330513 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
6 Hb_004316_080 0.1083375988 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
7 Hb_000260_670 0.1101944101 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
8 Hb_080147_070 0.1217673791 - - Rop5 [Hevea brasiliensis]
9 Hb_001159_220 0.1243148796 - - ESC, putative [Ricinus communis]
10 Hb_006316_090 0.1273091825 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_000954_040 0.1277058576 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
12 Hb_011861_040 0.129840771 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
13 Hb_000103_460 0.1313911884 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_000272_010 0.1339418801 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
15 Hb_008143_050 0.1361081288 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
16 Hb_000343_020 0.1363170974 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
17 Hb_002874_010 0.1363303182 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
18 Hb_001369_550 0.1367186395 - - 21 kDa protein precursor, putative [Ricinus communis]
19 Hb_001284_070 0.1374090253 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003360_010 0.1387825025 - - Bipolar kinesin KRP-130, putative [Ricinus communis]

Gene co-expression network

sample Hb_001649_050 Hb_001649_050 Hb_005306_030 Hb_005306_030 Hb_001649_050--Hb_005306_030 Hb_011849_030 Hb_011849_030 Hb_001649_050--Hb_011849_030 Hb_004607_020 Hb_004607_020 Hb_001649_050--Hb_004607_020 Hb_001366_380 Hb_001366_380 Hb_001649_050--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_001649_050--Hb_004316_080 Hb_000260_670 Hb_000260_670 Hb_001649_050--Hb_000260_670 Hb_005306_030--Hb_001366_380 Hb_005306_030--Hb_011849_030 Hb_008143_050 Hb_008143_050 Hb_005306_030--Hb_008143_050 Hb_000103_460 Hb_000103_460 Hb_005306_030--Hb_000103_460 Hb_005306_030--Hb_004607_020 Hb_001159_220 Hb_001159_220 Hb_011849_030--Hb_001159_220 Hb_011849_030--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_004607_020--Hb_001369_550 Hb_000272_010 Hb_000272_010 Hb_001366_380--Hb_000272_010 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_004316_080--Hb_006316_090 Hb_004316_080--Hb_004607_020 Hb_007951_020 Hb_007951_020 Hb_004316_080--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_004316_080--Hb_005743_010 Hb_001476_030 Hb_001476_030 Hb_004316_080--Hb_001476_030 Hb_000260_670--Hb_080147_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_000260_670--Hb_002700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367167 2.47675 24.3999 9.12521 0 0.0467443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.05876 0.069344 0.130541 7.47737 1.69615

CAGE analysis