Hb_027337_010

Information

Type -
Description -
Location Contig27337: 17128-23692
Sequence    

Annotation

kegg
ID rcu:RCOM_0776820
description Potassium transporter, putative
nr
ID XP_002521896.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID Q67UC7
description Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2
trembl
ID B9S7C7
description Potassium transporter OS=Ricinus communis GN=RCOM_0776820 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable potassium transporter 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28531: 17130-17239 , PASA_asmbl_28532: 17851-18300 , PASA_asmbl_28533: 21745-21968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_010 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_003992_130 0.0901146003 - - unnamed protein product [Vitis vinifera]
3 Hb_002817_030 0.0938122917 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
4 Hb_003626_020 0.0944121053 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
5 Hb_002918_220 0.0944130895 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
6 Hb_001571_080 0.0993423934 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
7 Hb_005568_140 0.1081793779 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004607_020 0.1108480342 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
9 Hb_001439_240 0.1128109666 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
10 Hb_002311_500 0.1172168236 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
11 Hb_002995_010 0.1194320475 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
12 Hb_000035_150 0.1204827981 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
13 Hb_011849_030 0.1204961945 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002205_160 0.1222543847 - - chalcone isomerase [Hibiscus cannabinus]
15 Hb_000038_070 0.1224136123 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000830_010 0.1244339748 - - conserved hypothetical protein [Ricinus communis]
17 Hb_181744_010 0.1262138065 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_027905_040 0.1275496315 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
19 Hb_010267_020 0.1295623504 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_002700_030 0.1309055739 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]

Gene co-expression network

sample Hb_027337_010 Hb_027337_010 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_003626_020 Hb_003626_020 Hb_027337_010--Hb_003626_020 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_000035_150 Hb_000035_150 Hb_003992_130--Hb_000035_150 Hb_004213_010 Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003992_130--Hb_003626_020 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_000914_140 Hb_000914_140 Hb_002817_030--Hb_000914_140 Hb_002311_500 Hb_002311_500 Hb_002817_030--Hb_002311_500 Hb_003573_050 Hb_003573_050 Hb_002817_030--Hb_003573_050 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_003626_020--Hb_000035_150 Hb_001310_060 Hb_001310_060 Hb_003626_020--Hb_001310_060 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_004422_030 Hb_004422_030 Hb_002918_220--Hb_004422_030 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_010267_020 Hb_010267_020 Hb_002918_220--Hb_010267_020 Hb_001571_080--Hb_005568_140 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_001571_080--Hb_007237_020 Hb_000027_160 Hb_000027_160 Hb_001571_080--Hb_000027_160 Hb_005568_140--Hb_004109_100 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_005568_140--Hb_010267_020 Hb_005568_140--Hb_004422_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421481 3.53287 1.43179 0 0.00794622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.484099 0.447082

CAGE analysis