Hb_000914_140

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig914: 129635-130951
Sequence    

Annotation

kegg
ID rcu:RCOM_1577400
description transcription factor, putative
nr
ID XP_002513474.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIA5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1577400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62196: 128889-129883 , PASA_asmbl_62197: 129029-129368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_140 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_003573_050 0.0896607458 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_002817_030 0.1025051006 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
4 Hb_001828_110 0.1145286952 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
5 Hb_002311_500 0.1209924138 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
6 Hb_002053_180 0.1234934322 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
7 Hb_003759_040 0.1248046283 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
8 Hb_001307_020 0.1271115502 - - electron carrier, putative [Ricinus communis]
9 Hb_001776_130 0.1284325957 - - metallothionein [Hevea brasiliensis]
10 Hb_009907_020 0.1328251993 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
11 Hb_004117_280 0.1331316176 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
12 Hb_007237_020 0.1342071807 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
13 Hb_000907_140 0.1369221678 - - PREDICTED: annexin D5-like [Jatropha curcas]
14 Hb_002995_010 0.1371412365 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
15 Hb_007101_040 0.1397446738 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
16 Hb_000731_280 0.1422702288 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
17 Hb_000627_040 0.1434938444 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_004567_070 0.1438283855 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000027_160 0.1455349647 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_000199_040 0.145788876 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000914_140 Hb_000914_140 Hb_003573_050 Hb_003573_050 Hb_000914_140--Hb_003573_050 Hb_002817_030 Hb_002817_030 Hb_000914_140--Hb_002817_030 Hb_001828_110 Hb_001828_110 Hb_000914_140--Hb_001828_110 Hb_002311_500 Hb_002311_500 Hb_000914_140--Hb_002311_500 Hb_002053_180 Hb_002053_180 Hb_000914_140--Hb_002053_180 Hb_003759_040 Hb_003759_040 Hb_000914_140--Hb_003759_040 Hb_003573_050--Hb_001828_110 Hb_003573_050--Hb_002817_030 Hb_000418_170 Hb_000418_170 Hb_003573_050--Hb_000418_170 Hb_003747_250 Hb_003747_250 Hb_003573_050--Hb_003747_250 Hb_002490_060 Hb_002490_060 Hb_003573_050--Hb_002490_060 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_002817_030--Hb_002311_500 Hb_001828_110--Hb_003747_250 Hb_000527_050 Hb_000527_050 Hb_001828_110--Hb_000527_050 Hb_001307_020 Hb_001307_020 Hb_001828_110--Hb_001307_020 Hb_000300_190 Hb_000300_190 Hb_001828_110--Hb_000300_190 Hb_004567_070 Hb_004567_070 Hb_002311_500--Hb_004567_070 Hb_009907_020 Hb_009907_020 Hb_002311_500--Hb_009907_020 Hb_000392_170 Hb_000392_170 Hb_002311_500--Hb_000392_170 Hb_002995_010 Hb_002995_010 Hb_002311_500--Hb_002995_010 Hb_002200_020 Hb_002200_020 Hb_002311_500--Hb_002200_020 Hb_000200_270 Hb_000200_270 Hb_002311_500--Hb_000200_270 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_002053_180--Hb_007237_020 Hb_006922_020 Hb_006922_020 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002053_180--Hb_002490_060 Hb_007120_130 Hb_007120_130 Hb_003759_040--Hb_007120_130 Hb_001776_130 Hb_001776_130 Hb_003759_040--Hb_001776_130 Hb_005834_050 Hb_005834_050 Hb_003759_040--Hb_005834_050 Hb_028487_040 Hb_028487_040 Hb_003759_040--Hb_028487_040 Hb_003759_040--Hb_002995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.642707 2.41198 1.22815 0.0149181 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0285811 0.0534076 0.445798 0.534962

CAGE analysis