Hb_001828_110

Information

Type -
Description -
Location Contig1828: 110165-119355
Sequence    

Annotation

kegg
ID egr:104419164
description lysine histidine transporter 1-like
nr
ID XP_010554094.1
description PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
swissprot
ID Q9FKS8
description Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
trembl
ID K4BDI3
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g093870.2 PE=4 SV=1
Gene Ontology
ID GO:0005737
description lysine histidine transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17815: 112370-112854 , PASA_asmbl_17816: 112994-114315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_110 0.0 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
2 Hb_003573_050 0.0505101568 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_003747_250 0.106893736 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
4 Hb_000914_140 0.1145286952 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
5 Hb_000527_050 0.1151327025 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001307_020 0.1170830511 - - electron carrier, putative [Ricinus communis]
7 Hb_000300_190 0.1256141342 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
8 Hb_002639_050 0.1261543766 - - multicopper oxidase, putative [Ricinus communis]
9 Hb_000418_170 0.1272051061 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
10 Hb_002490_060 0.1304692616 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
11 Hb_001159_090 0.131283198 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
12 Hb_006120_210 0.1318836945 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_001054_040 0.1322537011 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
14 Hb_006922_020 0.1336185482 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
15 Hb_000735_060 0.1351871961 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
16 Hb_001366_290 0.1387151489 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
17 Hb_001157_050 0.1394229565 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
18 Hb_006196_030 0.1398897186 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
19 Hb_000365_430 0.1403509366 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
20 Hb_002053_180 0.1404891531 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]

Gene co-expression network

sample Hb_001828_110 Hb_001828_110 Hb_003573_050 Hb_003573_050 Hb_001828_110--Hb_003573_050 Hb_003747_250 Hb_003747_250 Hb_001828_110--Hb_003747_250 Hb_000914_140 Hb_000914_140 Hb_001828_110--Hb_000914_140 Hb_000527_050 Hb_000527_050 Hb_001828_110--Hb_000527_050 Hb_001307_020 Hb_001307_020 Hb_001828_110--Hb_001307_020 Hb_000300_190 Hb_000300_190 Hb_001828_110--Hb_000300_190 Hb_003573_050--Hb_000914_140 Hb_002817_030 Hb_002817_030 Hb_003573_050--Hb_002817_030 Hb_000418_170 Hb_000418_170 Hb_003573_050--Hb_000418_170 Hb_003573_050--Hb_003747_250 Hb_002490_060 Hb_002490_060 Hb_003573_050--Hb_002490_060 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_008749_010 Hb_008749_010 Hb_003747_250--Hb_008749_010 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_000914_140--Hb_002817_030 Hb_002311_500 Hb_002311_500 Hb_000914_140--Hb_002311_500 Hb_002053_180 Hb_002053_180 Hb_000914_140--Hb_002053_180 Hb_003759_040 Hb_003759_040 Hb_000914_140--Hb_003759_040 Hb_010381_100 Hb_010381_100 Hb_000527_050--Hb_010381_100 Hb_021065_010 Hb_021065_010 Hb_000527_050--Hb_021065_010 Hb_001157_050 Hb_001157_050 Hb_000527_050--Hb_001157_050 Hb_000527_050--Hb_000418_170 Hb_001366_290 Hb_001366_290 Hb_000527_050--Hb_001366_290 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_001541_190 Hb_001541_190 Hb_001307_020--Hb_001541_190 Hb_000027_160 Hb_000027_160 Hb_001307_020--Hb_000027_160 Hb_000905_100 Hb_000905_100 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_003992_280 Hb_003992_280 Hb_000300_190--Hb_003992_280 Hb_003055_080 Hb_003055_080 Hb_000300_190--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000375_260 Hb_000375_260 Hb_000300_190--Hb_000375_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00756893 1.15444 3.62568 3.18206 0.0151539 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0343523 0.0270316 0.128899 0.579546 0.919876

CAGE analysis