Hb_004223_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4223: 39115-41379
Sequence    

Annotation

kegg
ID rcu:RCOM_1597570
description nucleic acid binding protein, putative
nr
ID XP_002510523.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R880
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1597570 PE=4 SV=1
Gene Ontology
ID GO:0003950
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_080 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000809_130 0.0932243751 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
3 Hb_000002_370 0.1044078661 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
4 Hb_001025_140 0.1045781703 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
5 Hb_000392_170 0.1060682748 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
6 Hb_000349_250 0.1079789539 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
7 Hb_001307_020 0.1083460145 - - electron carrier, putative [Ricinus communis]
8 Hb_002311_500 0.1107350678 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
9 Hb_001571_080 0.1118479859 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
10 Hb_004567_070 0.1175095631 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001638_120 0.118180554 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
12 Hb_000905_100 0.1195545268 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
13 Hb_000836_090 0.1196766221 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
14 Hb_000103_370 0.1201188515 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
15 Hb_002053_180 0.1202590687 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
16 Hb_000027_160 0.1211480741 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
17 Hb_000199_040 0.122029952 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000395_120 0.1264568356 - - Stellacyanin, putative [Ricinus communis]
19 Hb_001085_160 0.1329422782 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
20 Hb_007237_020 0.132967274 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_080 Hb_004223_080 Hb_000809_130 Hb_000809_130 Hb_004223_080--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_004223_080--Hb_000002_370 Hb_001025_140 Hb_001025_140 Hb_004223_080--Hb_001025_140 Hb_000392_170 Hb_000392_170 Hb_004223_080--Hb_000392_170 Hb_000349_250 Hb_000349_250 Hb_004223_080--Hb_000349_250 Hb_001307_020 Hb_001307_020 Hb_004223_080--Hb_001307_020 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000905_100 Hb_000905_100 Hb_000809_130--Hb_000905_100 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400 Hb_000199_040 Hb_000199_040 Hb_000002_370--Hb_000199_040 Hb_000002_370--Hb_000103_370 Hb_003777_120 Hb_003777_120 Hb_000002_370--Hb_003777_120 Hb_002053_180 Hb_002053_180 Hb_000002_370--Hb_002053_180 Hb_000836_090 Hb_000836_090 Hb_000002_370--Hb_000836_090 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_000438_200 Hb_000438_200 Hb_001025_140--Hb_000438_200 Hb_000059_030 Hb_000059_030 Hb_001025_140--Hb_000059_030 Hb_115962_010 Hb_115962_010 Hb_001025_140--Hb_115962_010 Hb_001638_120 Hb_001638_120 Hb_001025_140--Hb_001638_120 Hb_000049_030 Hb_000049_030 Hb_001025_140--Hb_000049_030 Hb_004316_020 Hb_004316_020 Hb_000392_170--Hb_004316_020 Hb_002311_500 Hb_002311_500 Hb_000392_170--Hb_002311_500 Hb_002200_020 Hb_002200_020 Hb_000392_170--Hb_002200_020 Hb_000856_230 Hb_000856_230 Hb_000392_170--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_000392_170--Hb_000200_270 Hb_000027_160 Hb_000027_160 Hb_000349_250--Hb_000027_160 Hb_019973_010 Hb_019973_010 Hb_000349_250--Hb_019973_010 Hb_000349_250--Hb_002053_180 Hb_071674_010 Hb_071674_010 Hb_000349_250--Hb_071674_010 Hb_001571_080 Hb_001571_080 Hb_000349_250--Hb_001571_080 Hb_001541_190 Hb_001541_190 Hb_001307_020--Hb_001541_190 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_001307_020--Hb_000905_100 Hb_001307_020--Hb_000809_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125737 2.11076 7.15137 3.56716 0.0713105 0.0280225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0265659 0 0.33966 1.60699

CAGE analysis