Hb_000049_030

Information

Type -
Description -
Location Contig49: 11857-13238
Sequence    

Annotation

kegg
ID rcu:RCOM_0542290
description hypothetical protein
nr
ID XP_002526544.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKM5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0542290 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tetratricopeptide repeat-like superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45239: 12188-13108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_059429_010 0.0751741374 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
3 Hb_059318_010 0.0865276532 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_115962_010 0.0865478275 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_001983_040 0.0903582051 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
6 Hb_000438_200 0.0922590172 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
7 Hb_029262_010 0.0975935165 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
8 Hb_001913_070 0.0982732003 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
9 Hb_032731_010 0.101389948 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
10 Hb_010422_020 0.1072379341 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
11 Hb_004308_030 0.1096403495 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
12 Hb_001926_020 0.1177533801 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_006501_080 0.1224399411 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
14 Hb_074966_010 0.1236196974 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_001025_140 0.1242779958 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
16 Hb_018563_010 0.1257826316 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
17 Hb_000809_220 0.1284917792 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
18 Hb_003777_120 0.1334879673 - - -
19 Hb_000243_290 0.1343714688 - - plastidic aldolase family protein [Populus trichocarpa]
20 Hb_000349_250 0.1343718339 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_030 Hb_000049_030 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_115962_010 Hb_115962_010 Hb_000049_030--Hb_115962_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_000438_200 Hb_000438_200 Hb_000049_030--Hb_000438_200 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010 Hb_059429_010--Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_059429_010--Hb_010422_020 Hb_032731_010 Hb_032731_010 Hb_059429_010--Hb_032731_010 Hb_001913_070 Hb_001913_070 Hb_059429_010--Hb_001913_070 Hb_007007_100 Hb_007007_100 Hb_059429_010--Hb_007007_100 Hb_074966_010 Hb_074966_010 Hb_059318_010--Hb_074966_010 Hb_059318_010--Hb_032731_010 Hb_001926_020 Hb_001926_020 Hb_059318_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_115962_010--Hb_000438_200 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_012496_020 Hb_012496_020 Hb_115962_010--Hb_012496_020 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_001025_140 Hb_001025_140 Hb_115962_010--Hb_001025_140 Hb_001983_040--Hb_010422_020 Hb_001983_040--Hb_001913_070 Hb_000809_220 Hb_000809_220 Hb_001983_040--Hb_000809_220 Hb_000051_150 Hb_000051_150 Hb_001983_040--Hb_000051_150 Hb_018563_010 Hb_018563_010 Hb_000438_200--Hb_018563_010 Hb_000438_200--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_000438_200--Hb_167206_010 Hb_000438_200--Hb_001025_140 Hb_004308_030 Hb_004308_030 Hb_029262_010--Hb_004308_030 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_004202_030 Hb_004202_030 Hb_029262_010--Hb_004202_030 Hb_006501_080 Hb_006501_080 Hb_029262_010--Hb_006501_080 Hb_003502_040 Hb_003502_040 Hb_029262_010--Hb_003502_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0374069 9.1306 34.7253 11.9065 0.017525 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0854881 0.0672441 0 0.161758 9.30079

CAGE analysis