Hb_000809_220

Information

Type -
Description -
Location Contig809: 168596-170655
Sequence    

Annotation

kegg
ID rcu:RCOM_0601700
description short-chain dehydrogenase, putative
nr
ID XP_012079198.1
description PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
swissprot
ID Q99RF5
description Uncharacterized oxidoreductase SAV2478 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2478 PE=3 SV=1
trembl
ID A0A067K6N4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12362 PE=4 SV=1
Gene Ontology
ID GO:0016491
description 3-ketodihydrosphingosine reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59165: 168481-170777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_220 0.0 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
2 Hb_002121_030 0.072845873 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
3 Hb_000051_150 0.0732034918 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
4 Hb_004308_030 0.0890701736 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_001913_070 0.0906790951 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
6 Hb_001983_040 0.0908965918 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
7 Hb_010422_020 0.0944251136 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
8 Hb_000152_650 0.0972038779 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_104014_010 0.1015267282 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
10 Hb_006620_030 0.1023383207 - - nitrate reductase, putative [Ricinus communis]
11 Hb_006501_080 0.1049587535 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
12 Hb_001369_590 0.1069849621 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
13 Hb_004003_020 0.1076371239 - - unnamed protein product [Coffea canephora]
14 Hb_000283_090 0.1114450938 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_054615_010 0.1180749597 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_059429_010 0.1190492689 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
17 Hb_005365_040 0.1205929997 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
18 Hb_003767_030 0.1217981747 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
19 Hb_001680_020 0.1226018015 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
20 Hb_049846_010 0.1227325287 - - hypothetical protein JCGZ_23781 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_220 Hb_000809_220 Hb_002121_030 Hb_002121_030 Hb_000809_220--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_000809_220--Hb_000051_150 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030 Hb_001913_070 Hb_001913_070 Hb_000809_220--Hb_001913_070 Hb_001983_040 Hb_001983_040 Hb_000809_220--Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_000809_220--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_002121_030--Hb_001369_590 Hb_002121_030--Hb_000051_150 Hb_000152_650 Hb_000152_650 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_005365_040 Hb_005365_040 Hb_002121_030--Hb_005365_040 Hb_000051_150--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_000051_150--Hb_010422_020 Hb_000051_150--Hb_001369_590 Hb_006501_080 Hb_006501_080 Hb_004308_030--Hb_006501_080 Hb_029262_010 Hb_029262_010 Hb_004308_030--Hb_029262_010 Hb_006620_030 Hb_006620_030 Hb_004308_030--Hb_006620_030 Hb_049846_010 Hb_049846_010 Hb_004308_030--Hb_049846_010 Hb_004202_030 Hb_004202_030 Hb_004308_030--Hb_004202_030 Hb_001913_070--Hb_010422_020 Hb_001913_070--Hb_104014_010 Hb_001913_070--Hb_001983_040 Hb_149985_030 Hb_149985_030 Hb_001913_070--Hb_149985_030 Hb_000349_170 Hb_000349_170 Hb_001913_070--Hb_000349_170 Hb_001983_040--Hb_010422_020 Hb_059429_010 Hb_059429_010 Hb_001983_040--Hb_059429_010 Hb_000049_030 Hb_000049_030 Hb_001983_040--Hb_000049_030 Hb_001983_040--Hb_000051_150 Hb_010422_020--Hb_059429_010 Hb_010422_020--Hb_104014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0961116 3.55967 35.136 9.30619 0.0360241 0.121946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0970515 7.26836

CAGE analysis